Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS24060 and EX31_RS24065 are separated by 31 nucleotidesEX31_RS24065 and EX31_RS24070 are separated by 30 nucleotidesEX31_RS24070 and EX31_RS24075 overlap by 16 nucleotidesEX31_RS24075 and EX31_RS24080 are separated by 42 nucleotides EX31_RS24060: EX31_RS24060 - pyrimidine utilization transport protein G, at 581,496 to 582,845 _RS24060 EX31_RS24065: EX31_RS24065 - pyrimidine utilization flavin reductase protein F, at 582,877 to 583,503 _RS24065 EX31_RS24070: EX31_RS24070 - malonic semialdehyde reductase, at 583,534 to 584,124 _RS24070 EX31_RS24075: EX31_RS24075 - pyrimidine utilization protein D, at 584,109 to 584,948 _RS24075 EX31_RS24080: EX31_RS24080 - pyrimidine utilization protein C, at 584,991 to 585,377 _RS24080
Group Condition EX31_RS24060 EX31_RS24065 EX31_RS24070 EX31_RS24075 EX31_RS24080
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.1 -1.3 +0.2 -0.5 -0.3
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.1 -1.6 +0.2 -0.1 -0.2
nitrogen source L-Serine (N); RCH2 media; no shaking -0.4 -0.2 -0.2 -0.3 -0.5
nitrogen source L-Serine (N); RCH2 media; no shaking -0.4 -1.2 +0.3 -0.1 -0.2
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.0 -0.7 -0.4 +0.1 -0.2
carbon source D-Mannitol (C) +0.2 -0.2 -0.8 -0.4 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.3 -1.0 -0.2 +0.2 +0.2
carbon source NLDM_metabolites (C) -0.5 -0.4 -0.4 +0.4 -0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.0 -1.5 +0.4 +0.3 -0.1
mgl MGL -0.1 -0.4 -0.4 +0.4 -0.3
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.0 -1.0 +0.1 +0.4 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.3 +0.6 -0.3 -0.1 -0.2
carbon source casaminos (C) +0.0 -0.7 +0.5 +0.2 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.1 +0.4 +0.2 -0.5 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.1 +0.7 -0.7 -0.2 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.0 +0.9 -0.5 -0.1 +0.0
carbon source D,L-Lactate (C) -0.4 +1.2 -0.1 -0.5 +0.3
nl-ccm; low oxygen NL-CCM; low oxygen -0.0 +0.8 -0.4 +0.2 +0.1
carbon source D-Xylose (C) -0.2 +1.0 -0.1 +0.2 -0.0
nl-ccm; high oxygen NL-CCM; high oxygen +0.2 +0.7 +0.1 -0.2 +0.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.0 +1.2 -0.2 +0.0 +0.1
mgl MGL -0.0 +1.3 -0.2 -0.0 +0.1
carbon source D,L-Lactate (C) -0.0 +1.3 -0.1 +0.2 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.1 +1.1 +0.3 -0.1 +0.2
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 +0.9 +0.3 +0.2 +0.0
nl-ccm; high oxygen NL-CCM; high oxygen +0.0 +0.9 +0.1 +0.3 +0.1
nf_with10percent_fulln NF_with10percent_fullN +0.2 +1.0 +0.3 +0.0 +0.1
carbon source Sucrose (C) +0.2 +1.1 +0.1 +0.1 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.0 +1.0 +0.2 +0.3 +0.2
carbon source NLDM_metabolites (C) +0.1 +1.5 +0.6 -0.1 -0.1
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