Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS23990 and EX31_RS23995 overlap by 1 nucleotidesEX31_RS23995 and EX31_RS24000 overlap by 8 nucleotidesEX31_RS24000 and EX31_RS24005 are separated by 179 nucleotidesEX31_RS24005 and EX31_RS24010 are separated by 27 nucleotides EX31_RS23990: EX31_RS23990 - SDR family NAD(P)-dependent oxidoreductase, at 566,353 to 567,069 _RS23990 EX31_RS23995: EX31_RS23995 - nuclear transport factor 2 family protein, at 567,069 to 567,521 _RS23995 EX31_RS24000: EX31_RS24000 - MerR family transcriptional regulator, at 567,514 to 568,374 _RS24000 EX31_RS24005: EX31_RS24005 - helix-turn-helix transcriptional regulator, at 568,554 to 569,123 _RS24005 EX31_RS24010: EX31_RS24010 - GNAT family N-acetyltransferase, at 569,151 to 569,687 _RS24010
Group Condition EX31_RS23990 EX31_RS23995 EX31_RS24000 EX31_RS24005 EX31_RS24010
carbon source Sucrose (C) -1.7 -0.5 -0.5 +0.1 -1.3
mgl MGL -3.6 +0.1 -0.1 +0.1 -0.2
nitrogen source L-Glutamine (N); ShewMM media; shaking -1.0 -0.0 -0.2 -0.3 -0.5
nl-ccm; high oxygen NL-CCM; high oxygen -1.7 -0.3 +0.2 +0.3 -0.5
nitrogen source Ammonium chloride (N); ShewMM media; shaking -1.1 -0.2 -0.2 -0.3 -0.3
carbon source casaminos (C) -0.7 -0.2 -0.3 -0.2 -0.4
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.1 -0.2 -0.3 -0.1 -0.8
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.3 -0.2 -0.3 -0.3 -0.5
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.8 +0.1 -0.3 -0.2 -0.3
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.9 -0.1 -0.7 +0.1 +0.2
carbon source Sucrose (C) -0.6 -0.2 -0.5 +0.2 -0.3
nitrogen source L-Glutamine (N); ShewMM media; shaking -1.0 -0.1 +0.2 -0.1 -0.3
nitrogen source L-Serine (N); RCH2 media; no shaking -0.6 +0.2 +0.0 -0.2 -0.6
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.9 +0.2 -0.0 +0.0 -0.4
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -1.4 +0.0 +0.2 -0.1 +0.3
nf_with10percent_fulln NF_with10percent_fullN -1.0 -0.1 -0.0 +0.2 +0.2
carbon source casaminos (C) +0.5 -0.1 -0.4 +0.3 -0.7
nln NLN -0.9 +0.2 -0.1 +0.0 +0.4
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.5 -0.1 +0.1 -0.2 +0.5
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -1.3 +0.2 +0.1 +0.5 +0.3
carbon source NLDM_metabolites (C) +0.4 +0.0 +0.0 +0.4 -1.0
nitrogen source L-Serine (N); RCH2 media; no shaking +0.7 -0.2 -0.2 +0.1 -0.5
nf_with10percent_fulln NF_with10percent_fullN -0.6 -0.1 +0.1 +0.5 +0.2
mgl MGL +0.1 -0.3 -0.3 +0.1 +0.6
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.6 +0.2 +0.4 +0.4 +0.0
nitrogen source L-Serine (N); ShewMM media; shaking +0.8 +0.2 +0.0 -0.2 -0.4
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.8 +0.1 +0.3 +0.4 +0.5
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +1.5 +0.1 -0.2 -0.3 -0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.4 -0.1 -0.0 +0.6 +0.7
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.9 +0.1 +0.3 +0.3 +0.3
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EX31_RS23990
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EX31_RS23995
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EX31_RS24010
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