Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS23885 and EX31_RS23890 are separated by 416 nucleotidesEX31_RS23890 and EX31_RS23895 are separated by 210 nucleotidesEX31_RS23895 and EX31_RS23900 are separated by 17 nucleotidesEX31_RS23900 and EX31_RS23905 are separated by 3 nucleotides EX31_RS23885: EX31_RS23885 - DUF1471 domain-containing protein, at 544,756 to 545,013 _RS23885 EX31_RS23890: EX31_RS23890 - hypothetical protein, at 545,430 to 545,687 _RS23890 EX31_RS23895: EX31_RS23895 - TetR/AcrR family transcriptional regulator, at 545,898 to 546,557 _RS23895 EX31_RS23900: EX31_RS23900 - DUF2236 domain-containing protein, at 546,575 to 547,441 _RS23900 EX31_RS23905: EX31_RS23905 - p-aminobenzoyl-glutamate transporter, at 547,445 to 548,968 _RS23905
Group Condition EX31_RS23885 EX31_RS23890 EX31_RS23895 EX31_RS23900 EX31_RS23905
nitrogen source Ammonium chloride (N); ShewMM media; shaking -1.0 -0.2 -1.1 -0.0 +0.1
nf_with_fulln NF_with_fullN +0.5 +0.1 -2.2 +0.1 -0.2
nl-ccm; high oxygen NL-CCM; high oxygen -0.2 -0.1 -0.9 -0.4 +0.0
nitrogen source L-Serine (N); ShewMM media; shaking -0.9 -0.0 -0.4 -0.3 -0.0
nl-ccm; low oxygen NL-CCM; low oxygen -0.1 -0.1 -1.1 -0.0 -0.1
nf_with_fulln NF_with_fullN +0.5 -0.3 -1.4 -0.1 -0.1
mgl MGL +0.5 -0.1 -1.5 +0.0 -0.2
nl-ccm; low oxygen NL-CCM; low oxygen +0.2 +0.0 -1.3 -0.2 -0.0
nf_with_fulln NF_with_fullN +0.6 +0.1 -1.7 +0.0 -0.2
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.2 -0.3 -1.0 +0.0 -0.1
mgl MGL +0.6 -0.4 -1.2 -0.1 +0.1
nf_with_fulln NF_with_fullN +0.6 +0.0 -1.4 +0.1 -0.2
nf_with_fulln NF_with_fullN +0.7 -0.0 -1.6 +0.0 +0.0
nl-ccm; low oxygen NL-CCM; low oxygen +0.3 +0.3 -1.3 -0.1 -0.1
nf_with_fulln NF_with_fullN +0.6 +0.2 -1.5 -0.1 -0.1
nl-ccm NL-CCM +0.3 -0.1 -0.9 -0.2 +0.0
nl-ccm; low oxygen NL-CCM; low oxygen +0.4 +0.2 -1.1 -0.2 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.3 +0.2 -0.9 +0.3 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.3 -0.3 -0.7 +0.2 -0.1
nf_with10percent_fulln NF_with10percent_fullN +0.4 +0.1 -0.7 -0.2 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.6 -0.3 -0.8 +0.2 +0.1
nl-ccm; high oxygen NL-CCM; high oxygen +0.5 +0.3 -0.6 -0.2 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen +0.5 +0.1 -0.8 -0.1 +0.1
carbon source NLDM_metabolites (C) +0.7 +0.2 -0.5 -0.2 -0.2
nln NLN +0.8 +0.3 -0.9 +0.0 -0.0
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.8 -0.1 -0.8 +0.2 +0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.5 +0.2 -0.7 +0.1 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.8 -0.4 -0.4 +0.3 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.5 +0.3 -0.6 +0.3 -0.0
carbon source casaminos (C) +0.8 +0.1 -0.5 +0.1 +0.3
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EX31_RS23885
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EX31_RS23890
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EX31_RS23900
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EX31_RS23905
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