Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS23040 and EX31_RS23045 are separated by 459 nucleotidesEX31_RS23045 and EX31_RS23050 are separated by 212 nucleotidesEX31_RS23050 and EX31_RS23055 are separated by 4 nucleotidesEX31_RS23055 and EX31_RS23060 are separated by 210 nucleotides EX31_RS23040: EX31_RS23040 - helix-turn-helix transcriptional regulator, at 370,545 to 371,201 _RS23040 EX31_RS23045: EX31_RS23045 - fluoride efflux transporter CrcB, at 371,661 to 372,044 _RS23045 EX31_RS23050: EX31_RS23050 - GNAT family N-acetyltransferase, at 372,257 to 372,679 _RS23050 EX31_RS23055: EX31_RS23055 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 372,684 to 374,030 _RS23055 EX31_RS23060: EX31_RS23060 - nitrate ABC transporter substrate-binding protein, at 374,241 to 375,197 _RS23060
Group Condition EX31_RS23040 EX31_RS23045 EX31_RS23050 EX31_RS23055 EX31_RS23060
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.0 -0.6 -1.1 -0.0 -0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.1 -0.0 -0.2 -0.7 -0.5
nf_with_fulln NF_with_fullN +0.0 -0.6 -0.6 -0.2 +0.0
nf_with_fulln NF_with_fullN -0.0 -0.6 -0.4 -0.3 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.2 +0.1 -0.7 -0.2 -0.2
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.2 +0.1 +0.1 -0.6 -0.4
nf_with_fulln NF_with_fullN +0.1 -0.4 -0.6 -0.1 +0.1
nitrogen source L-Serine (N); RCH2 media; shaking -0.2 -0.0 -0.7 +0.3 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.1 +0.2 +0.2 -0.5 -0.2
nf_with10percent_fulln NF_with10percent_fullN +0.2 +0.1 -0.7 +0.1 +0.1
nf_with10percent_fulln NF_with10percent_fullN +0.4 +0.1 -0.6 -0.1 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.3 +0.2 -0.7 +0.1 +0.3
mgl MGL +0.3 +0.3 -0.8 +0.2 +0.2
carbon source Sucrose (C) +0.4 +0.5 -0.5 +0.1 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.5 +0.0 -0.4 +0.2 +0.1
nl-ccm NL-CCM +0.1 +0.1 -0.4 +0.4 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.2 +0.2 -0.5 +0.4 +0.2
carbon source D,L-Lactate (C) +0.1 -0.0 -0.4 +0.3 +0.5
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.4 +0.0 -0.5 +0.4 +0.2
nl-ccm NL-CCM +0.3 +0.2 -0.3 +0.3 +0.4
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.5 +0.1 -0.1 +0.2 +0.2
carbon source Sucrose (C) +0.2 +0.2 +0.3 -0.1 +0.3
nl-ccm NL-CCM +0.4 +0.0 -0.1 +0.4 +0.3
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.1 +0.2 +0.1 +0.4 +0.4
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.4 +0.2 -0.1 +0.5 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.2 +0.2 +0.5 +0.3 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.2 +0.2 +0.3 +0.3 +0.3
carbon source D-Mannitol (C) -0.4 +0.3 +1.0 -0.2 +0.6
carbon source D-Xylose (C) +0.1 +0.3 +0.4 +0.4 +0.5
carbon source D,L-Lactate (C) +0.6 -0.0 +0.7 +0.7 +0.5
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EX31_RS23040
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EX31_RS23045
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EX31_RS23055
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EX31_RS23060
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