Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS22815 and EX31_RS22820 are separated by 56 nucleotidesEX31_RS22820 and EX31_RS22825 are separated by 255 nucleotidesEX31_RS22825 and EX31_RS22830 are separated by 99 nucleotidesEX31_RS22830 and EX31_RS22835 are separated by 32 nucleotides EX31_RS22815: EX31_RS22815 - GDP-mannose pyrophosphatase NudK, at 324,048 to 324,638 _RS22815 EX31_RS22820: EX31_RS22820 - hypothetical protein, at 324,695 to 325,870 _RS22820 EX31_RS22825: EX31_RS22825 - DUF1176 domain-containing protein, at 326,126 to 327,193 _RS22825 EX31_RS22830: EX31_RS22830 - ribosome-associated protein YbcJ, at 327,293 to 327,511 _RS22830 EX31_RS22835: EX31_RS22835 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD, at 327,544 to 328,416 _RS22835
Group Condition EX31_RS22815 EX31_RS22820 EX31_RS22825 EX31_RS22830 EX31_RS22835
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.0 -0.3 -0.1 N.D. N.D.
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 +0.0 -0.4 N.D. N.D.
carbon source D-Xylose (C) -0.1 -0.3 +0.1 N.D. N.D.
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.2 +0.1 -0.2 N.D. N.D.
carbon source D-Xylose (C) -0.2 -0.2 +0.2 N.D. N.D.
nf_with10percent_fulln NF_with10percent_fullN -0.3 +0.0 +0.1 N.D. N.D.
nf_with_fulln NF_with_fullN -0.2 -0.1 +0.2 N.D. N.D.
nl-ccm; high oxygen NL-CCM; high oxygen -0.1 -0.1 +0.2 N.D. N.D.
nf_with10percent_fulln NF_with10percent_fullN -0.2 +0.1 +0.1 N.D. N.D.
nl-ccm; high oxygen NL-CCM; high oxygen -0.2 -0.0 +0.2 N.D. N.D.
nitrogen source L-Serine (N); ShewMM media; no shaking +0.1 -0.2 +0.2 N.D. N.D.
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.1 -0.0 +0.2 N.D. N.D.
nln NLN -0.1 +0.1 +0.2 N.D. N.D.
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.0 -0.2 +0.3 N.D. N.D.
nf_with10percent_fulln NF_with10percent_fullN -0.1 +0.1 +0.2 N.D. N.D.
carbon source NLDM_metabolites (C) -0.2 +0.3 +0.1 N.D. N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 +0.1 +0.2 N.D. N.D.
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.1 -0.2 +0.4 N.D. N.D.
nf_with10percent_fulln NF_with10percent_fullN -0.1 +0.1 +0.2 N.D. N.D.
nl-ccm; high oxygen NL-CCM; high oxygen -0.1 +0.2 +0.2 N.D. N.D.
nf_with_fulln NF_with_fullN -0.1 +0.0 +0.3 N.D. N.D.
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.1 +0.2 +0.2 N.D. N.D.
nf_with_fulln NF_with_fullN -0.1 -0.0 +0.4 N.D. N.D.
nitrogen source L-Serine (N); ShewMM media; no shaking +0.2 +0.2 -0.1 N.D. N.D.
carbon source casaminos (C) -0.2 +0.3 +0.3 N.D. N.D.
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 +0.1 +0.2 N.D. N.D.
nf_with_fulln NF_with_fullN -0.0 -0.0 +0.5 N.D. N.D.
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.1 +0.2 +0.2 N.D. N.D.
carbon source NLDM_metabolites (C) +0.0 +0.3 +0.2 N.D. N.D.
nf_with_fulln NF_with_fullN -0.1 +0.2 +0.4 N.D. N.D.
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