Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS22710 and EX31_RS22715 are separated by 53 nucleotidesEX31_RS22715 and EX31_RS22720 are separated by 27 nucleotidesEX31_RS22720 and EX31_RS22725 are separated by 254 nucleotidesEX31_RS22725 and EX31_RS22730 are separated by 74 nucleotides EX31_RS22710: EX31_RS22710 - DnaA inactivator Hda, at 302,330 to 303,037 _RS22710 EX31_RS22715: EX31_RS22715 - arsenate reductase (glutaredoxin), at 303,091 to 303,447 _RS22715 EX31_RS22720: EX31_RS22720 - M48 family metallopeptidase, at 303,475 to 305,013 _RS22720 EX31_RS22725: EX31_RS22725 - AI-2E family transporter, at 305,268 to 306,332 _RS22725 EX31_RS22730: EX31_RS22730 - thioredoxin-dependent thiol peroxidase, at 306,407 to 306,874 _RS22730
Group Condition EX31_RS22710 EX31_RS22715 EX31_RS22720 EX31_RS22725 EX31_RS22730
nitrogen source Ammonium chloride (N); ShewMM media; no shaking N.D. -1.6 -0.1 +0.0 +0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking N.D. -0.8 -0.1 -0.0 -0.2
nitrogen source L-Serine (N); ShewMM media; no shaking N.D. -1.0 -0.2 -0.1 +0.3
carbon source NLDM_metabolites (C) N.D. -0.6 -0.1 -0.3 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking N.D. -0.9 +0.0 -0.0 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum N.D. -0.7 -0.1 -0.1 +0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking N.D. -0.8 -0.2 +0.1 +0.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen N.D. -0.8 +0.1 +0.1 +0.1
nl-ccm_agar NL-CCM_agar N.D. -0.6 -0.0 -0.2 +0.3
nln NLN N.D. -0.5 +0.1 -0.1 +0.3
nl-ccm; high oxygen NL-CCM; high oxygen N.D. -0.6 +0.1 +0.2 +0.3
carbon source Sucrose (C) N.D. +0.6 -0.1 +0.0 -0.5
carbon source D-Mannitol (C) N.D. +0.9 -0.2 -0.3 -0.4
nf_with10percent_fulln NF_with10percent_fullN N.D. -0.5 -0.0 +0.0 +0.7
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum N.D. +0.6 -0.1 -0.1 -0.2
nln NLN N.D. -0.3 +0.2 -0.1 +0.5
nf_with_fulln NF_with_fullN N.D. +0.6 -0.1 -0.2 +0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum N.D. +0.5 -0.1 -0.2 +0.1
carbon source Sucrose (C) N.D. +0.7 -0.3 -0.1 +0.1
carbon source NLDM_metabolites (C) N.D. +0.6 -0.2 -0.2 +0.1
nl-ccm; low oxygen NL-CCM; low oxygen N.D. +0.4 -0.2 +0.1 +0.2
carbon source casaminos (C) N.D. +0.7 -0.2 +0.0 +0.1
carbon source D-Xylose (C) N.D. +0.8 -0.1 -0.0 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking N.D. +0.4 -0.1 +0.1 +0.4
nf_with10percent_fulln NF_with10percent_fullN N.D. +0.5 -0.1 +0.0 +0.5
mgl MGL N.D. +0.3 +0.3 -0.0 +0.4
mgl MGL N.D. +0.8 +0.1 -0.1 +0.2
carbon source D,L-Lactate (C) N.D. +1.1 -0.1 +0.0 +0.2
nl-ccm; high oxygen NL-CCM; high oxygen N.D. +0.7 +0.2 +0.1 +0.2
carbon source D,L-Lactate (C) N.D. +0.6 +0.2 -0.1 +0.6
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EX31_RS22710
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EX31_RS22715
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EX31_RS22730
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