Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS22465 and EX31_RS22470 are separated by 120 nucleotidesEX31_RS22470 and EX31_RS22475 are separated by 16 nucleotidesEX31_RS22475 and EX31_RS22480 are separated by 141 nucleotidesEX31_RS22480 and EX31_RS22485 are separated by 169 nucleotides EX31_RS22465: EX31_RS22465 - type B 50S ribosomal protein L31, at 242,707 to 242,961 _RS22465 EX31_RS22470: EX31_RS22470 - multidrug efflux RND transporter permease subunit, at 243,082 to 246,234 _RS22470 EX31_RS22475: EX31_RS22475 - efflux RND transporter periplasmic adaptor subunit, at 246,251 to 247,426 _RS22475 EX31_RS22480: EX31_RS22480 - multidrug efflux transporter transcriptional repressor AcrR, at 247,568 to 248,206 _RS22480 EX31_RS22485: EX31_RS22485 - mechanosensitive channel MscK, at 248,376 to 251,771 _RS22485
Group Condition EX31_RS22465 EX31_RS22470 EX31_RS22475 EX31_RS22480 EX31_RS22485
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.1 -0.6 -0.5 -0.0 -0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.0 -0.5 -0.5 +0.0 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.3 -0.3 -0.2 +0.0 -0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.2 -0.6 -0.4 +0.1 -0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.4 -0.6 -0.5 +0.0 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.1 -0.2 -0.3 -0.1 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.4 -0.5 -0.5 +0.1 -0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.4 -0.5 -0.5 +0.2 -0.0
carbon source casaminos (C) +0.2 -0.2 -0.2 -0.0 +0.0
carbon source NLDM_metabolites (C) +0.2 -0.1 -0.2 -0.1 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.4 -0.2 -0.3 -0.1 +0.0
nl-ccm; low oxygen NL-CCM; low oxygen +0.3 -0.2 -0.2 -0.0 +0.0
nl-ccm NL-CCM +0.2 -0.2 -0.2 +0.1 -0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.3 -0.1 -0.2 -0.1 +0.0
carbon source Sucrose (C) -0.2 -0.1 -0.1 +0.3 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.3 -0.2 -0.2 +0.1 +0.0
nl-ccm; low oxygen NL-CCM; low oxygen +0.2 -0.2 -0.2 +0.0 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.4 -0.1 -0.1 -0.0 -0.1
nln NLN +0.3 -0.2 -0.1 +0.1 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.5 -0.0 -0.0 -0.2 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.3 -0.2 -0.1 +0.2 +0.0
mgl MGL -0.1 +0.2 +0.2 -0.2 +0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.3 +0.1 -0.1 -0.1 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.6 -0.1 -0.1 -0.1 -0.1
nf_with_fulln NF_with_fullN +0.3 -0.1 +0.0 +0.1 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.5 -0.0 +0.0 -0.1 +0.0
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.5 -0.1 +0.1 +0.0 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.4 +0.0 +0.2 -0.1 -0.1
nitrogen source L-Serine (N); ShewMM media; no shaking +0.2 +0.2 +0.2 -0.0 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.5 +0.0 +0.0 +0.1 +0.1
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EX31_RS22465
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EX31_RS22470
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EX31_RS22480
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EX31_RS22485
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