Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS22455 and EX31_RS22460 are separated by 124 nucleotidesEX31_RS22460 and EX31_RS22465 are separated by 20 nucleotidesEX31_RS22465 and EX31_RS22470 are separated by 120 nucleotidesEX31_RS22470 and EX31_RS22475 are separated by 16 nucleotides EX31_RS22455: EX31_RS22455 - metal ABC transporter substrate-binding protein, at 241,543 to 242,421 _RS22455 EX31_RS22460: EX31_RS22460 - 50S ribosomal protein L36, at 242,546 to 242,686 _RS22460 EX31_RS22465: EX31_RS22465 - type B 50S ribosomal protein L31, at 242,707 to 242,961 _RS22465 EX31_RS22470: EX31_RS22470 - multidrug efflux RND transporter permease subunit, at 243,082 to 246,234 _RS22470 EX31_RS22475: EX31_RS22475 - efflux RND transporter periplasmic adaptor subunit, at 246,251 to 247,426 _RS22475
Group Condition EX31_RS22455 EX31_RS22460 EX31_RS22465 EX31_RS22470 EX31_RS22475
carbon source Sucrose (C) -0.1 -1.0 -0.2 -0.1 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.0 -0.7 -0.1 -0.2 -0.3
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.0 +0.1 -0.1 -0.6 -0.5
nf_with_fulln NF_with_fullN -0.6 -0.3 +0.1 -0.2 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.1 -0.3 -0.3 -0.3 -0.2
nf_with_fulln NF_with_fullN -0.5 -0.5 +0.1 -0.2 +0.0
nf_with10percent_fulln NF_with10percent_fullN -0.3 -0.5 +0.1 -0.1 +0.1
nf_with_fulln NF_with_fullN -0.4 -0.2 +0.2 -0.2 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.1 -0.2 +0.4 -0.5 -0.5
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.3 +0.0 -0.0 -0.5 -0.5
nf_with_fulln NF_with_fullN -0.3 -0.4 +0.3 -0.2 +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.5 +0.3 +0.0 -0.1 -0.3
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.0 +0.2 +0.4 -0.6 -0.5
nitrogen source L-Serine (N); RCH2 media; shaking +0.3 -0.5 -0.3 -0.0 -0.0
nln NLN -0.2 -0.2 +0.3 -0.2 -0.1
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.3 -0.3 -0.1 -0.1 -0.2
carbon source NLDM_metabolites (C) +0.1 -0.4 +0.2 -0.1 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.1 -0.1 +0.4 -0.2 -0.3
nf_with_fulln NF_with_fullN -0.4 +0.1 +0.3 -0.2 +0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.4 +0.3 +0.2 -0.6 -0.4
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 +0.4 +0.4 -0.5 -0.5
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.1 -0.4 +0.5 -0.1 +0.1
carbon source casaminos (C) -0.3 +0.6 +0.2 -0.2 -0.2
nl-ccm NL-CCM -0.2 +0.3 +0.3 -0.2 -0.1
carbon source D,L-Lactate (C) +0.2 +0.5 -0.2 -0.1 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.3 +0.1 +0.3 -0.2 -0.2
nitrogen source L-Serine (N); ShewMM media; no shaking +0.4 -0.3 -0.0 +0.2 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.0 +0.4 +0.6 -0.1 -0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.4 +0.1 +0.3 +0.0 -0.0
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.4 +0.7 +0.3 -0.2 -0.1
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EX31_RS22455
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EX31_RS22460
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EX31_RS22470
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EX31_RS22475
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