Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS22290 and EX31_RS22295 are separated by 170 nucleotidesEX31_RS22295 and EX31_RS22300 are separated by 120 nucleotidesEX31_RS22300 and EX31_RS22305 are separated by 136 nucleotidesEX31_RS22305 and EX31_RS22310 overlap by 38 nucleotides EX31_RS22290: EX31_RS22290 - HMP-PP phosphatase, at 210,043 to 210,864 _RS22290 EX31_RS22295: EX31_RS22295 - PLP-dependent cysteine synthase family protein, at 211,035 to 212,078 _RS22295 EX31_RS22300: EX31_RS22300 - Lrp/AsnC family transcriptional regulator, at 212,199 to 212,654 _RS22300 EX31_RS22305: EX31_RS22305 - SmdA family multidrug ABC transporter permease/ATP-binding protein, at 212,791 to 214,563 _RS22305 EX31_RS22310: EX31_RS22310 - SmdB family multidrug efflux ABC transporter permease/ATP-binding protein, at 214,526 to 216,355 _RS22310
Group Condition EX31_RS22290 EX31_RS22295 EX31_RS22300 EX31_RS22305 EX31_RS22310
nf_with_fulln NF_with_fullN -0.1 +0.0 -0.3 -0.1 -0.3
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.2 -0.2 -0.3 +0.1 -0.1
nf_with_fulln NF_with_fullN +0.0 -0.0 -0.2 -0.1 -0.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 +0.0 -0.4 -0.1 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.2 +0.1 -0.3 -0.0 -0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.3 -0.1 +0.1 -0.0 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.4 +0.1 -0.1 +0.2 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.1 -0.1 -0.3 +0.2 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.2 -0.0 +0.1 +0.1 -0.2
carbon source NLDM_metabolites (C) -0.3 -0.2 +0.1 +0.2 -0.1
carbon source D-Xylose (C) +0.1 -0.2 +0.4 -0.1 -0.2
carbon source Sucrose (C) -0.1 -0.1 +0.4 -0.0 -0.1
carbon source casaminos (C) -0.2 +0.1 +0.3 +0.1 -0.1
carbon source D-Xylose (C) +0.0 -0.0 +0.7 -0.2 -0.2
nitrogen source L-Serine (N); ShewMM media; no shaking -0.1 +0.1 +0.3 -0.1 +0.0
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.2 -0.1 +0.3 -0.1 -0.0
carbon source D-Mannitol (C) +0.1 -0.0 +0.3 -0.0 -0.2
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.2 +0.1 +0.2 +0.1 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.3 +0.3 +0.2 +0.2 -0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.0 -0.2 +0.3 +0.2 -0.0
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.1 +0.2 +0.3 -0.0 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.3 +0.2 +0.1 -0.0 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.2 +0.1 +0.3 -0.0 -0.0
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.0 +0.0 +0.3 +0.1 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking +0.2 +0.2 +0.2 -0.1 +0.1
carbon source Sucrose (C) +0.0 -0.1 +0.8 +0.0 -0.2
carbon source D,L-Lactate (C) +0.1 +0.2 +0.3 -0.1 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.2 +0.0 +0.3 +0.0 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.1 +0.2 +0.2 +0.2 +0.1
carbon source NLDM_metabolites (C) +0.4 -0.0 +0.9 -0.2 -0.2
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