Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS22050 and EX31_RS22055 overlap by 8 nucleotidesEX31_RS22055 and EX31_RS22060 are separated by 270 nucleotidesEX31_RS22060 and EX31_RS22065 are separated by 444 nucleotidesEX31_RS22065 and EX31_RS22070 are separated by 156 nucleotides EX31_RS22050: EX31_RS22050 - helix-turn-helix domain-containing protein, at 157,526 to 157,858 _RS22050 EX31_RS22055: EX31_RS22055 - type II toxin-antitoxin system RelE/ParE family toxin, at 157,851 to 158,246 _RS22055 EX31_RS22060: EX31_RS22060 - cobalamin-independent methionine synthase II family protein, at 158,517 to 159,620 _RS22060 EX31_RS22065: EX31_RS22065 - branched-chain amino acid transport system II carrier protein, at 160,065 to 161,384 _RS22065 EX31_RS22070: EX31_RS22070 - proline-specific permease ProY, at 161,541 to 162,971 _RS22070
Group Condition EX31_RS22050 EX31_RS22055 EX31_RS22060 EX31_RS22065 EX31_RS22070
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.4 -0.1 -0.3 -0.1 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.1 -0.4 -0.3 -0.1 +0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.2 -0.0 -0.4 -0.1 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking -0.2 -0.1 -0.4 -0.1 +0.2
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.5 +0.3 +0.0 -0.0 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.4 +0.2 +0.1 -0.1 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.2 +0.3 +0.1 -0.1 -0.1
carbon source D-Xylose (C) -0.5 +0.1 +0.2 +0.2 -0.1
nf_with_fulln NF_with_fullN +0.3 -0.3 +0.1 -0.2 +0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.2 +0.4 +0.0 -0.2 -0.1
carbon source NLDM_metabolites (C) +0.0 +0.3 +0.1 -0.3 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.2 -0.4 +0.1 +0.0 +0.1
nf_with10percent_fulln NF_with10percent_fullN +0.7 -0.3 -0.1 -0.1 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.0 +0.5 -0.1 -0.1 -0.1
nf_with10percent_fulln NF_with10percent_fullN +0.5 -0.2 +0.1 -0.2 +0.1
nl-ccm; high oxygen NL-CCM; high oxygen +0.6 +0.0 -0.1 -0.1 -0.1
carbon source casaminos (C) +0.3 +0.3 -0.2 +0.2 +0.0
carbon source Sucrose (C) +0.4 +0.1 +0.1 -0.1 +0.2
nl-ccm; high oxygen NL-CCM; high oxygen +1.0 +0.1 -0.1 -0.2 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen +0.6 +0.2 +0.1 -0.1 -0.0
nf_with10percent_fulln NF_with10percent_fullN +0.7 -0.0 +0.1 +0.0 +0.0
nl-ccm; high oxygen NL-CCM; high oxygen +0.9 +0.2 +0.0 -0.0 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen +0.8 +0.2 +0.3 -0.1 -0.2
nl-ccm; high oxygen NL-CCM; high oxygen +0.7 +0.1 +0.1 +0.0 +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +2.2 -0.0 -0.0 -0.1 -0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +2.0 +0.1 -0.0 -0.1 -0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +2.4 -0.0 -0.3 -0.0 -0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +1.9 +0.1 +0.2 +0.0 -0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +2.3 +0.2 -0.0 -0.0 -0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +2.0 +0.3 +0.0 +0.1 -0.0
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