Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS21930 and EX31_RS21935 are separated by 137 nucleotidesEX31_RS21935 and EX31_RS21940 are separated by 138 nucleotidesEX31_RS21940 and EX31_RS21945 are separated by 56 nucleotidesEX31_RS21945 and EX31_RS21950 are separated by 394 nucleotides EX31_RS21930: EX31_RS21930 - GNAT family N-acetyltransferase, at 130,990 to 131,538 _RS21930 EX31_RS21935: EX31_RS21935 - helix-turn-helix domain-containing protein, at 131,676 to 132,467 _RS21935 EX31_RS21940: EX31_RS21940 - class I SAM-dependent methyltransferase, at 132,606 to 133,376 _RS21940 EX31_RS21945: EX31_RS21945 - DUF808 domain-containing protein, at 133,433 to 134,353 _RS21945 EX31_RS21950: EX31_RS21950 - DUF1471 domain-containing protein, at 134,748 to 135,023 _RS21950
Group Condition EX31_RS21930 EX31_RS21935 EX31_RS21940 EX31_RS21945 EX31_RS21950
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.4 -0.2 -0.2 +0.2 -0.4
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.3 -0.2 -0.1 +0.1 -0.4
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.2 -0.2 -0.1 -0.1 -0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.4 -0.4 -0.0 -0.2 +0.2
nitrogen source L-Serine (N); ShewMM media; no shaking +0.0 -0.3 -0.3 +0.4 -0.6
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.1 -0.1 -0.1 +0.0 -0.6
nl-ccm; low oxygen NL-CCM; low oxygen -0.2 +0.0 -0.1 -0.1 -0.4
nl-ccm; low oxygen NL-CCM; low oxygen +0.0 -0.1 -0.1 +0.2 -0.8
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.3 +0.0 -0.3 +0.2 -0.3
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.0 -0.1 -0.2 +0.3 -0.6
mgl MGL -0.3 +0.2 +0.1 -0.0 -0.4
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.0 +0.2 -0.1 -0.1 -0.5
nitrogen source L-Serine (N); RCH2 media; no shaking -0.1 +0.1 -0.1 +0.1 -0.6
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.0 -0.2 -0.2 +0.3 -0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.2 -0.1 +0.0 -0.4 +0.2
nitrogen source L-Serine (N); RCH2 media; shaking -0.1 +0.1 -0.3 +0.2 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.0 +0.1 -0.0 +0.2 -0.5
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.2 +0.0 +0.1 +0.3 -0.5
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.1 +0.0 -0.3 -0.1 +0.2
nl-ccm; high oxygen NL-CCM; high oxygen +0.2 +0.1 -0.1 +0.2 -0.4
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 +0.3 +0.1 +0.0 -0.4
carbon source D,L-Lactate (C) -0.3 +0.1 -0.1 -0.1 +0.6
carbon source NLDM_metabolites (C) +0.1 -0.4 +0.1 +0.0 +0.4
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.1 +0.0 -0.1 +0.1 +0.4
nitrogen source L-Serine (N); ShewMM media; no shaking -0.2 -0.0 -0.0 +0.4 +0.2
carbon source D-Mannitol (C) +0.2 -0.0 +0.0 -0.2 +0.5
carbon source D-Xylose (C) +0.2 -0.1 -0.0 -0.1 +0.7
nitrogen source L-Serine (N); RCH2 media; no shaking +0.1 -0.1 -0.0 +0.3 +0.4
carbon source casaminos (C) +0.2 -0.1 -0.0 -0.2 +0.7
nitrogen source L-Serine (N); ShewMM media; no shaking +0.0 -0.1 +0.1 +0.3 +0.5
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