Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS21700 and EX31_RS21705 are separated by 190 nucleotidesEX31_RS21705 and EX31_RS21715 are separated by 353 nucleotidesEX31_RS21715 and EX31_RS25615 are separated by 275 nucleotidesEX31_RS25615 and EX31_RS21720 are separated by 417 nucleotides EX31_RS21700: EX31_RS21700 - DeoR/GlpR transcriptional regulator, at 84,236 to 85,018 _RS21700 EX31_RS21705: EX31_RS21705 - ABC transporter substrate-binding protein, at 85,209 to 85,988 _RS21705 EX31_RS21715: EX31_RS21715 - glycoside hydrolase, at 86,342 to 89,224 _RS21715 EX31_RS25615: EX31_RS25615 - AlpA family phage regulatory protein, at 89,500 to 89,638 _RS25615 EX31_RS21720: EX31_RS21720 - DUF2892 domain-containing protein, at 90,056 to 90,586 _RS21720
Group Condition EX31_RS21700 EX31_RS21705 EX31_RS21715 EX31_RS25615 EX31_RS21720
nitrogen source L-Serine (N); RCH2 media; no shaking -0.4 +0.0 -0.1 N.D. -0.5
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 -0.4 -0.1 N.D. -0.3
nitrogen source L-Serine (N); RCH2 media; shaking -0.5 -0.2 +0.0 N.D. -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.4 +0.1 -0.0 N.D. -0.5
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 -0.1 -0.0 N.D. -0.5
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 -0.2 -0.0 N.D. -0.5
nitrogen source L-Serine (N); ShewMM media; no shaking -0.4 -0.2 +0.3 N.D. -0.2
nitrogen source L-Serine (N); ShewMM media; shaking -0.3 -0.4 -0.0 N.D. +0.2
nf_with10percent_fulln NF_with10percent_fullN +0.2 -0.1 -0.1 N.D. -0.3
nitrogen source L-Serine (N); ShewMM media; no shaking -0.7 -0.0 +0.0 N.D. +0.3
nl-ccm; low oxygen NL-CCM; low oxygen -0.1 +0.2 -0.1 N.D. -0.3
carbon source casaminos (C) -0.5 +0.2 -0.0 N.D. +0.1
mgl MGL -0.4 -0.1 +0.0 N.D. +0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.4 +0.2 +0.1 N.D. +0.0
carbon source D-Xylose (C) -0.3 +0.2 -0.0 N.D. +0.1
carbon source Sucrose (C) -0.0 +0.3 +0.0 N.D. -0.3
nl-ccm_agar NL-CCM_agar -0.1 +0.3 -0.1 N.D. -0.2
nitrogen source L-Serine (N); RCH2 media; shaking -0.3 +0.3 -0.0 N.D. +0.2
carbon source D-Xylose (C) -0.3 +0.1 +0.0 N.D. +0.2
mgl MGL -0.4 +0.3 +0.1 N.D. +0.1
carbon source casaminos (C) -0.5 +0.4 +0.0 N.D. +0.2
nl-ccm_agar NL-CCM_agar -0.2 -0.1 -0.0 N.D. +0.5
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.2 +0.4 +0.1 N.D. +0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.1 +0.3 -0.1 N.D. +0.3
carbon source NLDM_metabolites (C) +0.5 +0.1 +0.1 N.D. -0.2
carbon source NLDM_metabolites (C) -0.1 +0.2 -0.0 N.D. +0.4
carbon source D-Mannitol (C) -0.1 +0.4 +0.0 N.D. +0.2
carbon source D-Mannitol (C) +0.2 +0.6 +0.0 N.D. -0.2
carbon source Sucrose (C) +0.0 +0.5 +0.0 N.D. +0.3
carbon source D-Glucose (C) +0.2 +0.4 +0.1 N.D. +0.2
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EX31_RS21700
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EX31_RS21705
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EX31_RS25615
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EX31_RS21720
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