Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS21420 and EX31_RS21425 are separated by 134 nucleotidesEX31_RS21425 and EX31_RS21430 are separated by 60 nucleotidesEX31_RS21430 and EX31_RS21435 are separated by 136 nucleotidesEX31_RS21435 and EX31_RS21440 are separated by 181 nucleotides EX31_RS21420: EX31_RS21420 - LacI family DNA-binding transcriptional regulator, at 24,545 to 25,627 _RS21420 EX31_RS21425: EX31_RS21425 - beta-galactosidase, at 25,762 to 28,860 _RS21425 EX31_RS21430: EX31_RS21430 - MFS transporter, at 28,921 to 30,189 _RS21430 EX31_RS21435: EX31_RS21435 - small-conductance mechanosensitive channel MscS, at 30,326 to 31,213 _RS21435 EX31_RS21440: EX31_RS21440 - arginine exporter ArgO, at 31,395 to 32,012 _RS21440
Group Condition EX31_RS21420 EX31_RS21425 EX31_RS21430 EX31_RS21435 EX31_RS21440
nitrogen source L-Serine (N); RCH2 media; shaking -0.2 -0.0 -0.1 -0.3 -0.3
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.0 -0.1 -0.0 -0.1 -0.6
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.2 -0.1 -0.0 +0.1 -0.5
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.2 +0.1 +0.0 -0.1 -0.5
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.1 -0.1 +0.0 -0.2 -0.4
nitrogen source L-Serine (N); ShewMM media; no shaking +0.1 +0.1 +0.0 -0.2 -0.5
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.4 +0.0 -0.0 +0.1 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.3 -0.1 -0.1 -0.2 +0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.2 -0.0 -0.1 -0.4 +0.2
nitrogen source L-Serine (N); RCH2 media; no shaking -0.2 +0.0 -0.1 -0.3 +0.3
carbon source D,L-Lactate (C) -0.3 -0.2 -0.1 -0.1 +0.4
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.1 +0.0 +0.1 +0.0 -0.5
nitrogen source L-Serine (N); ShewMM media; shaking +0.1 +0.0 -0.1 +0.2 -0.5
carbon source NLDM_metabolites (C) -0.3 -0.1 -0.1 -0.0 +0.4
nl-ccm; low oxygen NL-CCM; low oxygen -0.3 -0.1 -0.0 +0.3 -0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.2 +0.0 +0.1 -0.1 -0.3
mgl MGL -0.3 -0.1 -0.1 +0.2 +0.3
carbon source D-Xylose (C) +0.1 -0.1 -0.1 -0.0 +0.5
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.1 +0.1 +0.1 -0.2 +0.3
carbon source D,L-Lactate (C) +0.0 -0.0 -0.1 +0.1 +0.4
carbon source D-Mannitol (C) -0.1 -0.2 +0.0 +0.2 +0.5
carbon source casaminos (C) -0.1 -0.0 -0.0 +0.2 +0.5
carbon source D-Glucose (C) -0.0 -0.0 -0.0 +0.0 +0.6
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.2 -0.1 +0.1 +0.0 +0.3
nf_with_fulln NF_with_fullN +0.1 +0.1 +0.1 +0.4 +0.1
nf_with_fulln NF_with_fullN +0.0 +0.1 +0.0 +0.5 +0.1
nf_with_fulln NF_with_fullN +0.1 +0.1 +0.0 +0.5 +0.1
carbon source casaminos (C) -0.2 +0.0 +0.1 +0.4 +0.6
nf_with_fulln NF_with_fullN +0.1 +0.1 -0.0 +0.4 +0.4
carbon source NLDM_metabolites (C) +0.0 -0.0 -0.1 -0.0 +1.0
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