Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS21335 and EX31_RS21340 are separated by 88 nucleotidesEX31_RS21340 and EX31_RS21345 are separated by 80 nucleotidesEX31_RS21345 and EX31_RS21350 are separated by 515 nucleotidesEX31_RS21350 and EX31_RS21355 are separated by 880 nucleotides EX31_RS21335: EX31_RS21335 - fimbrial protein, at 1,123 to 3,816 _RS21335 EX31_RS21340: EX31_RS21340 - Cro/Cl family transcriptional regulator, at 3,905 to 4,408 _RS21340 EX31_RS21345: EX31_RS21345 - fimbria/pilus periplasmic chaperone, at 4,489 to 5,232 _RS21345 EX31_RS21350: EX31_RS21350 - methionine adenosyltransferase, at 5,748 to 6,899 _RS21350 EX31_RS21355: EX31_RS21355 - biosynthetic arginine decarboxylase, at 7,780 to 9,762 _RS21355
Group Condition EX31_RS21335 EX31_RS21340 EX31_RS21345 EX31_RS21350 EX31_RS21355
nl-ccm; high oxygen NL-CCM; high oxygen -0.1 -0.2 -0.6 N.D. -0.0
nitrogen source L-Serine (N); ShewMM media; shaking -0.1 -0.2 -0.7 N.D. -0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 -0.0 -0.8 N.D. -0.1
nitrogen source L-Serine (N); ShewMM media; no shaking -0.0 -0.2 -0.7 N.D. -0.0
nitrogen source L-Serine (N); RCH2 media; no shaking -0.2 -0.3 -0.5 N.D. +0.0
nitrogen source L-Serine (N); ShewMM media; no shaking -0.0 -0.1 -0.6 N.D. -0.1
carbon source NLDM_metabolites (C) +0.2 -0.2 -1.0 N.D. +0.1
nitrogen source L-Serine (N); ShewMM media; shaking -0.1 -0.1 -0.4 N.D. -0.2
nitrogen source L-Serine (N); RCH2 media; shaking +0.0 -0.4 -0.4 N.D. -0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.0 -0.3 -0.4 N.D. -0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.0 -0.3 -0.3 N.D. -0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.1 -0.1 -0.5 N.D. -0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.0 -0.1 -0.5 N.D. -0.0
carbon source D-Xylose (C) -0.0 -0.5 -0.1 N.D. -0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.0 +0.1 -0.7 N.D. -0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.0 -0.1 -0.4 N.D. -0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.0 +0.1 -0.8 N.D. +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.0 -0.1 -0.6 N.D. +0.0
carbon source casaminos (C) +0.0 -0.2 -0.4 N.D. +0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.0 +0.0 -0.5 N.D. -0.1
nf_with_fulln NF_with_fullN +0.1 -0.2 -0.3 N.D. +0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.0 +0.2 -0.3 N.D. -0.2
nl-ccm; low oxygen NL-CCM; low oxygen -0.0 -0.3 +0.2 N.D. -0.2
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.0 -0.4 +0.2 N.D. -0.1
nl-ccm; vial NL-CCM; vial +0.1 -0.3 +0.1 N.D. -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.1 -0.2 +0.4 N.D. -0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.1 +0.2 +0.5 N.D. -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.1 -0.0 +0.4 N.D. -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.0 +0.3 +0.2 N.D. +0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.0 +0.2 +0.5 N.D. +0.0
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EX31_RS21335
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EX31_RS21340
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EX31_RS21355
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