Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS21135 and EX31_RS21140 overlap by 4 nucleotidesEX31_RS21140 and EX31_RS21145 are separated by 54 nucleotidesEX31_RS21145 and EX31_RS21150 are separated by 650 nucleotidesEX31_RS21150 and EX31_RS21155 overlap by 8 nucleotides EX31_RS21135: EX31_RS21135 - oxalurate catabolism protein HpxX, at 871,013 to 871,207 _RS21135 EX31_RS21140: EX31_RS21140 - AtzE family amidohydrolase, at 871,204 to 872,607 _RS21140 EX31_RS21145: EX31_RS21145 - oxalurate catabolism protein HpxZ, at 872,662 to 873,045 _RS21145 EX31_RS21150: EX31_RS21150 - allantoinase PuuE, at 873,696 to 874,634 _RS21150 EX31_RS21155: EX31_RS21155 - Asp/Glu racemase, at 874,627 to 875,385 _RS21155
Group Condition EX31_RS21135 EX31_RS21140 EX31_RS21145 EX31_RS21150 EX31_RS21155
carbon source NLDM_metabolites (C) -0.3 -0.2 -0.4 -0.2 -0.5
nitrogen source L-Serine (N); RCH2 media; shaking -0.2 -0.2 -0.9 -0.0 -0.2
nitrogen source L-Serine (N); RCH2 media; no shaking -0.0 -0.3 -1.1 -0.2 +0.0
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.3 +0.1 -0.5 -0.1 -0.4
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.3 -0.0 -0.5 -0.2 -0.0
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.5 +0.1 -0.4 -0.1 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.2 -0.1 -0.6 -0.1 +0.0
nl-ccm_agar NL-CCM_agar -0.3 -0.1 -0.4 +0.0 -0.0
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.1 -0.0 -0.3 -0.2 -0.1
nl-ccm NL-CCM -0.1 +0.0 -0.5 -0.2 -0.1
mgl MGL -0.1 +0.2 -0.6 +0.0 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.3 -0.0 -0.3 -0.2 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.5 +0.0 -0.2 -0.2 +0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.2 +0.0 -0.5 +0.0 +0.1
nl-ccm NL-CCM -0.3 -0.1 +0.1 -0.2 -0.1
carbon source casaminos (C) +0.2 -0.2 -0.4 +0.1 -0.2
mgl MGL -0.2 +0.1 -0.2 +0.2 -0.1
carbon source casaminos (C) -0.4 +0.1 +0.2 -0.2 +0.0
nitrogen source L-Serine (N); ShewMM media; shaking -0.3 -0.0 +0.4 -0.1 -0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.2 -0.1 +0.5 -0.2 +0.0
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.2 -0.1 +0.3 -0.1 -0.1
carbon source Sucrose (C) +0.1 -0.2 +0.5 +0.0 -0.2
nf_with10percent_fulln NF_with10percent_fullN +0.1 +0.2 -0.4 +0.1 +0.1
carbon source D-Xylose (C) +0.0 +0.0 +0.6 -0.3 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.3 +0.0 +0.9 -0.1 -0.0
nitrogen source L-Serine (N); RCH2 media; no shaking +0.2 +0.1 +0.3 -0.2 +0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.1 +0.2 +0.8 -0.0 -0.4
carbon source D-Glucose (C) -0.0 +0.1 +0.6 -0.1 -0.1
carbon source D-Mannitol (C) -0.3 +0.2 +0.8 -0.1 +0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.3 +0.0 +0.6 -0.1 -0.1
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EX31_RS21135
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EX31_RS21140
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EX31_RS21150
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EX31_RS21155
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