Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS20815 and EX31_RS20820 are separated by 206 nucleotidesEX31_RS20820 and EX31_RS20825 are separated by 26 nucleotidesEX31_RS20825 and EX31_RS20830 are separated by 34 nucleotidesEX31_RS20830 and EX31_RS26100 are separated by 164 nucleotides EX31_RS20815: EX31_RS20815 - hypothetical protein, at 812,824 to 813,093 _RS20815 EX31_RS20820: EX31_RS20820 - aldo/keto reductase, at 813,300 to 814,151 _RS20820 EX31_RS20825: EX31_RS20825 - aldo/keto reductase, at 814,178 to 815,167 _RS20825 EX31_RS20830: EX31_RS20830 - LysR family transcriptional regulator, at 815,202 to 816,095 _RS20830 EX31_RS26100: EX31_RS26100 - AraC family transcriptional regulator, at 816,260 to 816,334 _RS26100
Group Condition EX31_RS20815 EX31_RS20820 EX31_RS20825 EX31_RS20830 EX31_RS26100
carbon source NLDM_metabolites (C) +0.0 -0.2 -0.6 -0.0 -0.3
carbon source NLDM_metabolites (C) -0.2 -0.5 -0.4 -0.3 +0.5
nitrogen source L-Serine (N); RCH2 media; shaking -0.2 +0.0 +0.1 +0.0 -0.7
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.3 +0.0 -0.1 +0.0 -0.5
nf_with_fulln NF_with_fullN -0.3 +0.2 -0.1 -0.0 -0.5
nitrogen source L-Serine (N); RCH2 media; shaking -0.2 -0.0 +0.0 -0.1 -0.5
nf_with_fulln NF_with_fullN -0.2 +0.1 -0.0 -0.0 -0.4
carbon source D-Xylose (C) -0.0 -0.1 -0.2 +0.1 -0.3
mgl MGL -0.2 -0.2 +0.1 -0.1 -0.1
carbon source casaminos (C) -0.0 -0.3 -0.2 -0.2 +0.3
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.1 -0.0 +0.2 +0.0 -0.5
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.1 -0.0 +0.1 +0.2 -0.5
mgl MGL -0.1 +0.1 +0.1 -0.1 -0.3
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.2 +0.1 -0.2 +0.2 -0.2
carbon source D,L-Lactate (C) +0.3 -0.3 +0.0 -0.1 -0.1
nf_with_fulln NF_with_fullN -0.1 +0.1 +0.2 +0.1 -0.5
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.2 -0.1 +0.1 -0.2 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.1 +0.1 +0.2 -0.1 -0.3
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.2 +0.1 +0.2 -0.2 +0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.1 -0.1 +0.1 -0.0 +0.4
nitrogen source L-Serine (N); ShewMM media; shaking -0.1 -0.2 +0.1 +0.1 +0.4
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.3 +0.1 +0.2 -0.0 +0.3
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.2 +0.0 -0.2 +0.0 +0.3
nl-ccm NL-CCM -0.2 -0.0 +0.3 +0.2 +0.1
nl-ccm_agar NL-CCM_agar -0.2 +0.1 +0.1 +0.0 +0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.0 +0.0 +0.2 -0.1 +0.4
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.1 +0.1 +0.1 +0.0 +0.5
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.1 +0.1 +0.3 +0.1 +0.2
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.1 -0.0 +0.1 +0.2 +0.4
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.0 +0.2 +0.2 +0.2 +0.2
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EX31_RS20815
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EX31_RS20820
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EX31_RS20830
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EX31_RS26100
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