Fitness for 5 genes in Rahnella sp. WP5

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 123 experiments or choose conditions or try the comparative fitness browser

500 ntEX31_RS20655 and EX31_RS20660 are separated by 37 nucleotidesEX31_RS20660 and EX31_RS20665 overlap by 8 nucleotidesEX31_RS20665 and EX31_RS20670 are separated by 1444 nucleotidesEX31_RS20670 and EX31_RS20675 are separated by 352 nucleotides EX31_RS20655: EX31_RS20655 - hypothetical protein, at 773,065 to 773,268 _RS20655 EX31_RS20660: EX31_RS20660 - glucarate dehydratase, at 773,306 to 774,652 _RS20660 EX31_RS20665: EX31_RS20665 - MFS transporter, at 774,645 to 775,982 _RS20665 EX31_RS20670: EX31_RS20670 - RNA chaperone/antiterminator CspA, at 777,427 to 777,639 _RS20670 EX31_RS20675: EX31_RS20675 - DUF1615 domain-containing protein, at 777,992 to 779,098 _RS20675
Group Condition EX31_RS20655 EX31_RS20660 EX31_RS20665 EX31_RS20670 EX31_RS20675
mgl MGL -0.1 -0.1 -0.1 -5.0 +0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.4 +0.0 +0.0 -3.9 +0.1
carbon source casaminos (C) -0.2 +0.2 +0.1 -3.3 +0.0
nitrogen source L-Serine (N); ShewMM media; no shaking -0.7 +0.0 -0.2 -2.2 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.9 -0.1 -0.1 -1.9 -0.0
carbon source D-Glucose (C) +0.8 +0.1 +0.1 -3.5 -0.2
nl-ccm NL-CCM -0.1 +0.0 +0.0 -2.5 +0.0
nitrogen source L-Serine (N); RCH2 media; shaking -1.2 -0.1 -0.1 -0.9 -0.1
mgl MGL +0.0 +0.2 -0.1 -2.0 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.9 +0.1 -0.1 -0.8 +0.0
nitrogen source L-Serine (N); ShewMM media; shaking -1.2 -0.2 -0.0 -0.3 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.3 +0.1 -0.1 -1.4 +0.0
nl-ccm; vial NL-CCM; vial -0.2 -0.0 +0.2 -1.4 -0.2
carbon source D-Mannitol (C) -0.2 -0.0 -0.0 -1.2 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.5 -0.0 -0.2 -0.8 -0.1
carbon source D-Xylose (C) -0.1 +0.0 +0.1 -1.7 +0.0
nl-ccm; low oxygen NL-CCM; low oxygen -0.3 +0.1 -0.1 -1.1 -0.0
carbon source D-Xylose (C) -1.0 +0.1 +0.1 -0.4 -0.2
mgl MGL -0.7 +0.0 +0.2 -0.7 -0.1
nf_with10percent_fulln NF_with10percent_fullN -0.1 +0.0 +0.1 -1.3 -0.0
nitrogen source L-Glutamine (N); ShewMM media; shaking -1.4 +0.2 +0.0 -0.2 +0.2
nln NLN -0.5 +0.1 +0.1 -0.9 +0.0
nl-ccm; vial NL-CCM; vial +0.3 -0.0 +0.1 -1.1 +0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.9 +0.0 -0.0 +0.5 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.7 -0.1 -0.2 +0.8 -0.1
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.7 +0.1 -0.0 +1.1 -0.1
mgl MGL -0.3 +0.1 -0.2 +0.9 -0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.5 +0.0 +0.1 +0.9 +0.1
carbon source D,L-Lactate (C) +0.2 +0.1 -0.3 +1.0 +0.0
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.5 +0.1 +0.0 +0.9 -0.1
remove
EX31_RS20655
plot		 remove
EX31_RS20660
plot		 remove
EX31_RS20665		 remove
EX31_RS20670
plot		 remove
EX31_RS20675
plot