Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS20605 and EX31_RS20610 are separated by 419 nucleotidesEX31_RS20610 and EX31_RS20615 are separated by 154 nucleotidesEX31_RS20615 and EX31_RS20620 overlap by 4 nucleotidesEX31_RS20620 and EX31_RS20625 overlap by 1 nucleotides EX31_RS20605: EX31_RS20605 - sorbitol dehydrogenase, at 761,010 to 761,531 _RS20605 EX31_RS20610: EX31_RS20610 - nitrogen regulatory protein P-II, at 761,951 to 762,289 _RS20610 EX31_RS20615: EX31_RS20615 - two-component system response regulator GlrR, at 762,444 to 763,781 _RS20615 EX31_RS20620: EX31_RS20620 - two-component system QseEF-associated lipoprotein QseG, at 763,778 to 764,533 _RS20620 EX31_RS20625: EX31_RS20625 - HAMP domain-containing histidine kinase, at 764,533 to 765,972 _RS20625
Group Condition EX31_RS20605 EX31_RS20610 EX31_RS20615 EX31_RS20620 EX31_RS20625
carbon source NLDM_metabolites (C) -0.2 -0.9 -0.2 -1.5 -0.2
mgl MGL -0.2 -1.8 +0.1 -0.0 -0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.5 -0.9 -0.2 -0.1 +0.1
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.0 -0.9 -0.2 -0.4 +0.1
carbon source casaminos (C) -0.0 -1.1 -0.2 +0.0 -0.2
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.2 -1.0 -0.1 -0.3 +0.1
carbon source NLDM_metabolites (C) -0.3 -0.1 -0.2 -0.2 -0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.0 -0.5 +0.0 -0.3 -0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.0 -1.2 -0.0 +0.2 +0.1
mgl MGL +0.0 -0.9 -0.1 +0.2 -0.0
carbon source casaminos (C) -0.4 -0.3 -0.1 +0.2 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.2 -0.8 -0.3 +0.0 +0.2
nl-ccm; high oxygen NL-CCM; high oxygen +0.4 -0.4 -0.1 -0.3 -0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.1 -1.0 -0.0 +0.4 +0.1
mgl MGL -0.2 -0.8 +0.1 +0.4 +0.0
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.3 -0.3 -0.2 -0.3 +0.1
nf_with_fulln NF_with_fullN +0.1 -0.4 +0.3 -0.2 -0.3
carbon source Sucrose (C) -0.1 -0.6 +0.1 +0.4 -0.1
nln NLN +0.2 +0.2 +0.0 -0.5 -0.2
nl-ccm; high oxygen NL-CCM; high oxygen +0.3 -0.4 +0.1 -0.3 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.3 +0.2 -0.1 -0.7 +0.3
nitrogen source L-Serine (N); ShewMM media; shaking +0.2 +0.1 -0.1 -0.4 +0.2
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.4 -0.4 -0.1 +0.2 +0.0
nl-ccm; low oxygen NL-CCM; low oxygen +0.2 -0.2 +0.2 +0.4 -0.2
nf_with_fulln NF_with_fullN +0.2 +0.1 +0.3 +0.3 -0.3
carbon source D-Mannitol (C) +0.3 +0.7 +0.1 -0.3 +0.2
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.3 -0.1 +0.2 +0.2 +0.4
nitrogen source L-Serine (N); ShewMM media; no shaking +0.3 +0.4 +0.2 -0.1 +0.1
nl-ccm_agar NL-CCM_agar +0.2 +0.4 +0.2 +0.2 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.4 -0.0 +0.2 +0.3 +0.2
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EX31_RS20605
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EX31_RS20610
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EX31_RS20625
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