Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS20580 and EX31_RS20585 are separated by 163 nucleotidesEX31_RS20585 and EX31_RS20590 are separated by 332 nucleotidesEX31_RS20590 and EX31_RS20595 are separated by 64 nucleotidesEX31_RS20595 and EX31_RS20600 are separated by 10 nucleotides EX31_RS20580: EX31_RS20580 - 3-phenylpropionate MFS transporter, at 753,803 to 754,963 _RS20580 EX31_RS20585: EX31_RS20585 - serine hydroxymethyltransferase, at 755,127 to 756,380 _RS20585 EX31_RS20590: EX31_RS20590 - NO-inducible flavohemoprotein, at 756,713 to 757,903 _RS20590 EX31_RS20595: EX31_RS20595 - cytochrome c, at 757,968 to 759,371 _RS20595 EX31_RS20600: EX31_RS20600 - GMC family oxidoreductase, at 759,382 to 760,983 _RS20600
Group Condition EX31_RS20580 EX31_RS20585 EX31_RS20590 EX31_RS20595 EX31_RS20600
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.1 N.D. -0.1 -0.2 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking -0.3 N.D. -0.1 -0.1 +0.0
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.0 N.D. -0.0 -0.3 -0.1
nitrogen source L-Serine (N); RCH2 media; shaking -0.2 N.D. -0.1 -0.1 -0.1
carbon source Sucrose (C) -0.2 N.D. -0.0 -0.1 -0.1
nl-ccm NL-CCM -0.2 N.D. -0.1 -0.0 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking -0.1 N.D. +0.0 -0.1 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.4 N.D. -0.0 +0.1 -0.0
nitrogen source L-Serine (N); ShewMM media; shaking -0.2 N.D. -0.1 -0.0 -0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.1 N.D. -0.1 -0.0 -0.1
nl-ccm NL-CCM -0.2 N.D. +0.0 -0.0 -0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.2 N.D. +0.1 -0.0 -0.1
nl-ccm NL-CCM -0.2 N.D. +0.1 -0.1 -0.0
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.1 N.D. -0.1 -0.1 -0.1
mgl MGL +0.1 N.D. -0.1 -0.2 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.2 N.D. -0.2 +0.1 +0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.1 N.D. -0.2 -0.1 -0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.1 N.D. -0.2 -0.0 -0.0
carbon source casaminos (C) -0.2 N.D. +0.1 -0.1 +0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.2 N.D. -0.1 -0.2 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.1 N.D. +0.1 -0.0 +0.1
carbon source D,L-Lactate (C) +0.1 N.D. -0.0 -0.2 +0.1
carbon source D-Xylose (C) -0.1 N.D. +0.2 -0.1 +0.1
nitrogen source L-Serine (N); ShewMM media; shaking +0.2 N.D. -0.0 +0.0 -0.1
nf_with_fulln NF_with_fullN -0.0 N.D. +0.1 -0.0 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.0 N.D. +0.1 +0.2 +0.0
nln NLN +0.2 N.D. -0.0 +0.1 +0.1
carbon source casaminos (C) +0.2 N.D. +0.0 +0.1 -0.0
carbon source NLDM_metabolites (C) +0.1 N.D. +0.1 +0.3 -0.1
nf_with10percent_fulln NF_with10percent_fullN +0.1 N.D. +0.1 +0.1 +0.1
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EX31_RS20600
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