Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS19975 and EX31_RS19980 are separated by 871 nucleotidesEX31_RS19980 and EX31_RS19985 are separated by 4 nucleotidesEX31_RS19985 and EX31_RS19990 overlap by 14 nucleotidesEX31_RS19990 and EX31_RS19995 are separated by 32 nucleotides EX31_RS19975: EX31_RS19975 - curlin, at 625,176 to 625,664 _RS19975 EX31_RS19980: EX31_RS19980 - transcriptional regulator CsgD, at 626,536 to 627,186 _RS19980 EX31_RS19985: EX31_RS19985 - curli production assembly/transport protein CsgE, at 627,191 to 627,586 _RS19985 EX31_RS19990: EX31_RS19990 - curli production assembly/transport protein CsgF, at 627,573 to 628,037 _RS19990 EX31_RS19995: EX31_RS19995 - curli production assembly/transport protein CsgG, at 628,070 to 628,903 _RS19995
Group Condition EX31_RS19975 EX31_RS19980 EX31_RS19985 EX31_RS19990 EX31_RS19995
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.1 -0.2 -0.1 -0.3 -0.3
nl-ccm_agar NL-CCM_agar -0.3 -0.0 -0.4 -0.1 -0.2
mgl MGL -0.4 -0.2 -0.2 -0.2 +0.0
carbon source D-Xylose (C) +0.1 -0.1 -0.2 -0.7 -0.1
carbon source NLDM_metabolites (C) +0.0 +0.7 -0.9 -0.9 +0.4
carbon source casaminos (C) -0.6 +0.3 -0.2 -0.6 +0.4
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.3 -0.3 -0.2 +0.4 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.5 +0.0 -0.4 +0.3 +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.2 -0.3 -0.1 +0.3 -0.2
mgl MGL +0.2 -0.0 +0.2 -0.5 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.5 +0.3 -0.3 +0.3 -0.2
mgl MGL +0.5 -0.3 -0.1 -0.4 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.4 -0.3 +0.2 +0.1 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.0 +0.1 -0.4 +0.3 -0.2
carbon source D,L-Lactate (C) -0.4 +0.3 +0.1 -0.4 +0.3
carbon source D-Mannitol (C) -0.3 +0.3 -0.2 -0.0 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.1 +0.0 -0.4 +0.5 +0.0
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.3 -0.0 -0.2 +0.3 -0.2
carbon source D-Glucose (C) -0.4 +0.1 +0.4 -0.1 +0.1
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.4 -0.3 -0.3 +0.3 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.3 -0.1 -0.3 +0.4 +0.1
nitrogen source L-Serine (N); RCH2 media; shaking +0.5 -0.3 +0.1 -0.1 +0.2
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.2 -0.1 -0.2 +0.7 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.4 +0.0 -0.3 +0.6 -0.0
nitrogen source L-Serine (N); ShewMM media; shaking +0.1 -0.3 -0.1 +0.8 +0.2
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.1 -0.0 -0.1 +0.8 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.4 -0.2 +0.2 +0.3 -0.0
nitrogen source L-Serine (N); RCH2 media; no shaking +0.4 -0.1 +0.3 +0.5 -0.0
nitrogen source L-Serine (N); ShewMM media; shaking +0.2 +0.1 +0.2 +0.5 +0.2
nitrogen source L-Serine (N); RCH2 media; no shaking +0.4 +0.3 -0.2 +0.9 +0.1
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EX31_RS19995
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