Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS19940 and EX31_RS19945 are separated by 329 nucleotidesEX31_RS19945 and EX31_RS19950 are separated by 23 nucleotidesEX31_RS19950 and EX31_RS19955 are separated by 79 nucleotidesEX31_RS19955 and EX31_RS19960 overlap by 8 nucleotides EX31_RS19940: EX31_RS19940 - hydrogenase maturation peptidase HycI, at 617,248 to 617,733 _RS19940 EX31_RS19945: EX31_RS19945 - electron transport protein HydN, at 618,063 to 618,608 _RS19945 EX31_RS19950: EX31_RS19950 - formate dehydrogenase subunit alpha, at 618,632 to 620,803 _RS19950 EX31_RS19955: EX31_RS19955 - carbamoyltransferase HypF, at 620,883 to 623,210 _RS19955 EX31_RS19960: EX31_RS19960 - HoxN/HupN/NixA family nickel/cobalt transporter, at 623,203 to 624,228 _RS19960
Group Condition EX31_RS19940 EX31_RS19945 EX31_RS19950 EX31_RS19955 EX31_RS19960
carbon source NLDM_metabolites (C) -1.0 +0.1 -0.1 -0.0 +0.2
nl-ccm; low oxygen NL-CCM; low oxygen -0.4 -0.1 +0.1 -0.0 -0.2
nitrogen source L-Serine (N); ShewMM media; no shaking -0.4 -0.3 -0.0 +0.0 +0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.6 -0.2 -0.0 -0.1 +0.5
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.6 +0.0 -0.0 +0.1 +0.1
carbon source NLDM_metabolites (C) -0.4 +0.1 +0.1 +0.0 -0.2
nitrogen source L-Serine (N); ShewMM media; shaking -0.3 -0.2 -0.0 +0.1 +0.1
nf_with_fulln NF_with_fullN -0.2 -0.3 +0.1 -0.0 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.3 -0.1 +0.0 +0.1 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.3 -0.2 -0.0 -0.0 +0.1
nitrogen source L-Serine (N); ShewMM media; shaking -0.4 +0.2 -0.0 +0.0 -0.0
carbon source D,L-Lactate (C) -0.1 +0.2 +0.1 -0.1 -0.4
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.7 +0.2 +0.1 +0.2 +0.2
nitrogen source L-Serine (N); RCH2 media; no shaking +0.3 -0.5 -0.0 -0.0 +0.0
carbon source D-Mannitol (C) -0.6 +0.4 +0.0 -0.0 +0.0
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.2 +0.2 -0.1 -0.1 +0.0
nl-ccm; vial NL-CCM; vial +0.2 -0.2 -0.1 +0.1 +0.1
carbon source Sucrose (C) -0.4 +0.1 +0.2 +0.2 -0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.3 +0.0 +0.0 +0.2 +0.1
carbon source D-Xylose (C) -0.3 +0.0 +0.1 +0.1 +0.2
carbon source casaminos (C) -0.5 +0.4 +0.1 +0.0 +0.1
nitrogen source L-Serine (N); RCH2 media; shaking +0.2 -0.3 -0.0 +0.1 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.1 -0.1 +0.1 +0.1 +0.3
carbon source D-Xylose (C) +0.2 +0.2 +0.2 -0.1 -0.0
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.3 +0.1 +0.0 +0.1 -0.2
nl-ccm_agar NL-CCM_agar +0.5 +0.1 -0.1 -0.0 +0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 +0.0 +0.0 +0.1 +0.4
carbon source Sucrose (C) +0.2 +0.2 +0.1 -0.1 +0.3
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.0 +0.2 +0.1 +0.2 +0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.2 +0.1 +0.1 +0.1 +0.2
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