Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS19900 and EX31_RS19905 are separated by 147 nucleotidesEX31_RS19905 and EX31_RS19910 overlap by 4 nucleotidesEX31_RS19910 and EX31_RS19915 are separated by 10 nucleotidesEX31_RS19915 and EX31_RS19920 are separated by 44 nucleotides EX31_RS19900: EX31_RS19900 - formate hydrogenlyase regulator HycA, at 609,531 to 609,998 _RS19900 EX31_RS19905: EX31_RS19905 - 4Fe-4S dicluster domain-containing protein, at 610,146 to 610,775 _RS19905 EX31_RS19910: EX31_RS19910 - NADH dehydrogenase, at 610,772 to 612,676 _RS19910 EX31_RS19915: EX31_RS19915 - respiratory chain complex I subunit 1 family protein, at 612,687 to 613,640 _RS19915 EX31_RS19920: EX31_RS19920 - hydrogenase large subunit, at 613,685 to 615,409 _RS19920
Group Condition EX31_RS19900 EX31_RS19905 EX31_RS19910 EX31_RS19915 EX31_RS19920
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.2 -0.3 -0.0 -0.1 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.5 -0.1 +0.1 -0.1 +0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.1 -0.3 -0.2 -0.1 -0.1
carbon source Sucrose (C) -0.1 -0.2 +0.1 -0.2 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen -0.5 +0.1 -0.0 +0.1 -0.0
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.7 +0.1 -0.0 +0.1 +0.1
nl-ccm_agar NL-CCM_agar +0.2 -0.4 -0.0 -0.0 -0.1
nln NLN -0.3 +0.1 -0.1 +0.1 -0.1
nitrogen source L-Serine (N); RCH2 media; shaking -0.2 -0.2 -0.1 +0.1 +0.2
nf_with_fulln NF_with_fullN -0.2 +0.2 +0.0 -0.2 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.5 +0.1 +0.0 +0.2 +0.0
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.4 +0.1 -0.0 -0.0 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking -0.6 +0.3 +0.0 +0.1 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.4 +0.2 -0.0 +0.1 +0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.5 +0.1 +0.1 +0.1 +0.0
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.5 +0.4 -0.0 +0.1 +0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.2 -0.3 +0.1 -0.0 +0.0
nl-ccm; low oxygen NL-CCM; low oxygen +0.1 -0.1 -0.2 +0.1 +0.1
carbon source D,L-Lactate (C) +0.2 -0.2 +0.1 -0.1 +0.1
carbon source NLDM_metabolites (C) +0.7 -0.5 +0.0 +0.0 -0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 -0.2 +0.1 +0.1 +0.0
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.2 +0.1 +0.3 +0.0 +0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.2 +0.4 +0.0 +0.0 +0.0
carbon source D-Xylose (C) +0.2 -0.1 +0.2 +0.0 -0.0
nitrogen source L-Serine (N); ShewMM media; no shaking -0.1 +0.4 +0.2 -0.1 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.2 +0.3 -0.1 -0.0 +0.2
nitrogen source L-Serine (N); ShewMM media; shaking -0.0 +0.2 +0.1 +0.1 +0.2
nitrogen source L-Serine (N); RCH2 media; shaking +0.1 +0.2 +0.1 +0.1 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.1 +0.3 +0.1 +0.1 +0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.0 +0.5 +0.1 +0.2 +0.1
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