Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS19795 and EX31_RS19800 are separated by 250 nucleotidesEX31_RS19800 and EX31_RS19805 are separated by 42 nucleotidesEX31_RS19805 and EX31_RS19810 are separated by 41 nucleotidesEX31_RS19810 and EX31_RS19815 are separated by 13 nucleotides EX31_RS19795: EX31_RS19795 - hypothetical protein, at 590,404 to 590,736 _RS19795 EX31_RS19800: EX31_RS19800 - N-acetyltransferase, at 590,987 to 591,514 _RS19800 EX31_RS19805: EX31_RS19805 - MFS transporter, at 591,557 to 593,095 _RS19805 EX31_RS19810: EX31_RS19810 - Gfo/Idh/MocA family oxidoreductase, at 593,137 to 594,159 _RS19810 EX31_RS19815: EX31_RS19815 - Gfo/Idh/MocA family oxidoreductase, at 594,173 to 595,240 _RS19815
Group Condition EX31_RS19795 EX31_RS19800 EX31_RS19805 EX31_RS19810 EX31_RS19815
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -2.1 +0.1 -0.0 -0.0 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -1.5 -0.3 -0.0 -0.0 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -1.8 +0.3 -0.0 -0.0 +0.1
nl-ccm_agar NL-CCM_agar -1.4 -0.0 -0.0 +0.1 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -1.3 +0.0 -0.1 -0.0 +0.0
carbon source D-Xylose (C) -1.3 +0.1 -0.1 +0.1 +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -1.0 +0.0 -0.2 +0.0 -0.0
nl-ccm; low oxygen NL-CCM; low oxygen -0.9 -0.1 -0.1 -0.0 +0.0
nitrogen source L-Serine (N); RCH2 media; shaking -1.0 +0.0 -0.1 -0.0 -0.0
nl-ccm_agar NL-CCM_agar -0.8 -0.1 -0.1 -0.1 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.6 +0.1 -0.4 -0.0 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen -0.8 -0.1 -0.2 +0.1 -0.0
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.9 +0.1 +0.0 -0.1 -0.0
nitrogen source L-Serine (N); ShewMM media; no shaking -0.9 +0.1 -0.0 +0.0 +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.5 +0.2 -0.2 -0.1 +0.1
nl-ccm; low oxygen NL-CCM; low oxygen -0.7 +0.2 -0.0 -0.2 +0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -1.0 +0.0 -0.0 +0.2 +0.3
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.8 -0.1 +0.1 +0.1 +0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.8 +0.1 +0.1 +0.1 +0.1
nln NLN -0.5 +0.1 -0.1 -0.1 +0.2
carbon source D,L-Lactate (C) +0.6 -0.1 -0.1 -0.4 +0.0
nf_with_fulln NF_with_fullN +0.7 +0.0 -0.2 -0.2 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking +0.8 -0.1 -0.1 +0.1 +0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.9 +0.0 -0.0 -0.1 +0.1
nitrogen source L-Serine (N); RCH2 media; shaking +0.9 +0.0 -0.1 +0.0 -0.0
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.9 +0.0 +0.1 +0.1 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking +1.0 +0.1 -0.0 +0.0 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +1.1 +0.1 +0.1 +0.0 -0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +1.0 +0.3 -0.0 +0.1 +0.0
mgl MGL +0.8 +0.2 +0.0 +0.2 +0.1
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