Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS19745 and EX31_RS19750 overlap by 4 nucleotidesEX31_RS19750 and EX31_RS19755 overlap by 4 nucleotidesEX31_RS19755 and EX31_RS19760 overlap by 4 nucleotidesEX31_RS19760 and EX31_RS19765 are separated by 217 nucleotides EX31_RS19745: EX31_RS19745 - heme lyase CcmF/NrfE family subunit, at 582,043 to 584,016 _RS19745 EX31_RS19750: EX31_RS19750 - cytochrome c maturation protein CcmE, at 584,013 to 584,507 _RS19750 EX31_RS19755: EX31_RS19755 - heme exporter protein CcmD, at 584,504 to 584,764 _RS19755 EX31_RS19760: EX31_RS19760 - heme ABC transporter permease, at 584,761 to 585,498 _RS19760 EX31_RS19765: EX31_RS19765 - heme exporter protein CcmB, at 585,716 to 586,375 _RS19765
Group Condition EX31_RS19745 EX31_RS19750 EX31_RS19755 EX31_RS19760 EX31_RS19765
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.2 +0.3 -0.3 -0.0 -0.2
mgl MGL -0.1 -0.2 +0.3 -0.1 -0.3
nf_with_fulln NF_with_fullN -0.2 -0.2 +0.3 -0.1 -0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.0 -0.3 +0.2 +0.0 -0.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.0 -0.5 +0.3 -0.1 +0.0
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.1 -0.3 +0.1 +0.2 -0.1
nf_with_fulln NF_with_fullN -0.1 -0.2 +0.2 -0.1 -0.0
mgl MGL -0.1 +0.0 +0.2 -0.2 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.2 +0.4 +0.0 -0.1 -0.4
nitrogen source L-Serine (N); RCH2 media; no shaking +0.1 -0.6 +0.3 -0.1 +0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.1 -0.2 +0.3 -0.1 -0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.1 -0.1 +0.3 +0.1 -0.2
nl-ccm_agar NL-CCM_agar -0.0 +0.1 +0.3 +0.0 -0.3
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.1 -0.3 +0.3 +0.1 -0.0
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.1 +0.1 +0.2 +0.2 -0.3
carbon source Sucrose (C) +0.1 -0.0 +0.4 -0.2 +0.0
nitrogen source L-Serine (N); ShewMM media; shaking +0.1 -0.2 +0.6 -0.1 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.1 -0.2 +0.3 +0.1 +0.0
nitrogen source L-Serine (N); RCH2 media; shaking +0.1 -0.1 +0.4 -0.1 +0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 -0.1 +0.4 -0.0 +0.0
carbon source D-Mannitol (C) +0.1 -0.1 +0.3 +0.1 +0.2
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 -0.1 +0.4 -0.1 +0.2
carbon source D,L-Lactate (C) +0.1 +0.2 +0.2 +0.1 -0.1
carbon source D-Glucose (C) -0.1 +0.2 +0.2 +0.1 +0.2
nitrogen source L-Serine (N); RCH2 media; no shaking +0.0 +0.0 +0.7 +0.1 -0.2
carbon source D,L-Lactate (C) +0.1 +0.0 +0.4 +0.0 +0.1
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 +0.2 +0.4 -0.1 +0.1
carbon source casaminos (C) +0.0 +0.2 +0.5 -0.1 +0.2
carbon source NLDM_metabolites (C) +0.1 +0.5 +0.2 +0.1 -0.2
carbon source casaminos (C) +0.0 +0.0 +0.5 +0.3 -0.0
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