Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS19725 and EX31_RS19730 are separated by 34 nucleotidesEX31_RS19730 and EX31_RS19735 overlap by 4 nucleotidesEX31_RS19735 and EX31_RS19740 overlap by 4 nucleotidesEX31_RS19740 and EX31_RS19745 overlap by 4 nucleotides EX31_RS19725: EX31_RS19725 - phospholipid-binding lipoprotein MlaA, at 579,000 to 579,767 _RS19725 EX31_RS19730: EX31_RS19730 - c-type cytochrome biogenesis protein CcmI, at 579,802 to 581,016 _RS19730 EX31_RS19735: EX31_RS19735 - cytochrome c-type biogenesis protein CcmH, at 581,013 to 581,498 _RS19735 EX31_RS19740: EX31_RS19740 - DsbE family thiol:disulfide interchange protein, at 581,495 to 582,046 _RS19740 EX31_RS19745: EX31_RS19745 - heme lyase CcmF/NrfE family subunit, at 582,043 to 584,016 _RS19745
Group Condition EX31_RS19725 EX31_RS19730 EX31_RS19735 EX31_RS19740 EX31_RS19745
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.4 -0.1 +0.1 -0.2 -0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.6 -0.2 -0.0 -0.0 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking -0.0 -0.0 -0.2 -0.3 +0.0
carbon source NLDM_metabolites (C) +0.1 -0.1 -0.4 -0.2 +0.1
nitrogen source L-Serine (N); ShewMM media; shaking -0.2 -0.2 +0.1 -0.3 +0.0
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.3 -0.2 +0.0 -0.0 +0.0
nl-ccm_agar NL-CCM_agar -0.3 +0.1 -0.1 -0.1 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.4 -0.1 +0.2 -0.2 -0.0
nitrogen source L-Serine (N); ShewMM media; shaking -0.3 -0.2 +0.1 -0.2 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.3 -0.2 +0.0 +0.1 -0.1
carbon source D-Mannitol (C) -0.1 -0.1 -0.1 -0.2 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking -0.3 +0.0 -0.2 +0.0 +0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.2 -0.1 +0.2 -0.2 -0.1
nitrogen source L-Serine (N); RCH2 media; shaking -0.1 -0.1 -0.2 -0.1 +0.1
nitrogen source L-Serine (N); RCH2 media; shaking -0.3 -0.0 -0.1 -0.0 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.2 -0.1 +0.1 +0.0 -0.2
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.3 +0.1 +0.1 -0.1 +0.0
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.2 -0.1 +0.2 -0.0 -0.1
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.3 +0.1 +0.1 -0.1 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.3 +0.0 +0.1 -0.2 +0.1
nf_with_fulln NF_with_fullN +0.2 -0.0 +0.1 -0.1 -0.2
nf_with_fulln NF_with_fullN +0.2 -0.1 +0.0 +0.2 -0.2
carbon source D-Glucose (C) +0.1 -0.2 +0.1 +0.2 -0.1
nf_with_fulln NF_with_fullN +0.2 -0.1 +0.1 +0.2 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.2 +0.1 +0.0 +0.1 -0.1
nl-ccm; low oxygen NL-CCM; low oxygen -0.1 +0.2 +0.1 +0.3 +0.0
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 +0.2 +0.2 -0.0 +0.1
carbon source D,L-Lactate (C) +0.4 -0.0 -0.0 +0.1 +0.1
nln NLN +0.3 +0.2 -0.0 +0.1 +0.0
carbon source D,L-Lactate (C) +0.4 +0.1 +0.1 +0.0 +0.1
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EX31_RS19745
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