Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS18880 and EX31_RS18885 overlap by 8 nucleotidesEX31_RS18885 and EX31_RS18890 are separated by 81 nucleotidesEX31_RS18890 and EX31_RS18895 are separated by 399 nucleotidesEX31_RS18895 and EX31_RS18900 are separated by 175 nucleotides EX31_RS18880: EX31_RS18880 - thioredoxin reductase, at 362,788 to 363,429 _RS18880 EX31_RS18885: EX31_RS18885 - molybdopterin-dependent oxidoreductase, at 363,422 to 364,186 _RS18885 EX31_RS18890: EX31_RS18890 - outer membrane protein OmpX, at 364,268 to 364,801 _RS18890 EX31_RS18895: EX31_RS18895 - threonine/homoserine exporter RhtA, at 365,201 to 366,187 _RS18895 EX31_RS18900: EX31_RS18900 - fasciclin domain-containing protein, at 366,363 to 366,926 _RS18900
Group Condition EX31_RS18880 EX31_RS18885 EX31_RS18890 EX31_RS18895 EX31_RS18900
carbon source D,L-Lactate (C) +0.3 -0.2 -0.4 +0.1 -0.3
carbon source Sucrose (C) +0.3 -0.6 -0.1 +0.2 -0.1
carbon source NLDM_metabolites (C) -0.3 +0.2 +0.1 +0.1 -0.3
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.2 -0.5 -0.0 -0.0 +0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.4 -0.3 -0.1 -0.1 +0.2
carbon source casaminos (C) -0.3 -0.1 +0.2 +0.2 +0.4
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.4 +0.2 -0.1 +0.0 +0.3
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.3 +0.4 +0.1 -0.0 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.1 +0.5 +0.2 -0.1 +0.2
nf_with_fulln NF_with_fullN -0.1 +0.4 +0.3 +0.1 +0.3
nitrogen source L-Serine (N); ShewMM media; no shaking +0.2 +0.5 +0.1 -0.1 +0.3
nl-ccm; high oxygen NL-CCM; high oxygen -0.1 -0.0 +0.6 +0.2 +0.3
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 -0.2 +0.6 +0.0 +0.4
nl-ccm; high oxygen NL-CCM; high oxygen -0.1 +0.3 +0.5 +0.2 +0.1
nl-ccm; low oxygen NL-CCM; low oxygen -0.0 +0.5 +0.4 +0.1 +0.2
nf_with10percent_fulln NF_with10percent_fullN -0.2 +0.2 +0.5 +0.3 +0.3
nl-ccm; high oxygen NL-CCM; high oxygen +0.0 +0.1 +0.5 +0.2 +0.2
nf_with_fulln NF_with_fullN +0.1 +0.4 +0.3 +0.0 +0.2
nf_with10percent_fulln NF_with10percent_fullN +0.0 +0.1 +0.6 +0.2 +0.3
nln NLN +0.1 +0.3 +0.3 +0.1 +0.3
nf_with_fulln NF_with_fullN +0.1 +0.6 +0.3 +0.0 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.5 -0.2 +1.5 +0.1 +0.3
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 +0.1 +0.7 +0.2 +0.2
nf_with10percent_fulln NF_with10percent_fullN +0.1 +0.1 +0.6 +0.2 +0.3
nf_with10percent_fulln NF_with10percent_fullN -0.0 +0.2 +0.8 +0.2 +0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 -0.1 +1.3 +0.1 +0.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 +0.0 +1.4 -0.0 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.0 +0.2 +1.3 +0.2 +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 +0.1 +1.1 +0.2 +0.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 +0.1 +1.2 +0.1 +0.4
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EX31_RS18880
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EX31_RS18900
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