Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS18780 and EX31_RS18785 are separated by 350 nucleotidesEX31_RS18785 and EX31_RS18790 overlap by 4 nucleotidesEX31_RS18790 and EX31_RS18795 are separated by 27 nucleotidesEX31_RS18795 and EX31_RS18800 are separated by 3 nucleotides EX31_RS18780: EX31_RS18780 - nucleoside-specific channel-forming protein Tsx, at 341,610 to 342,497 _RS18780 EX31_RS18785: EX31_RS18785 - DUF2384 domain-containing protein, at 342,848 to 343,309 _RS18785 EX31_RS18790: EX31_RS18790 - RES domain-containing protein, at 343,306 to 343,764 _RS18790 EX31_RS18795: EX31_RS18795 - DMT family transporter, at 343,792 to 344,244 _RS18795 EX31_RS18800: EX31_RS18800 - DMT family transporter, at 344,248 to 344,682 _RS18800
Group Condition EX31_RS18780 EX31_RS18785 EX31_RS18790 EX31_RS18795 EX31_RS18800
carbon source D,L-Lactate (C) +0.0 -1.6 -0.4 -0.3 +0.2
carbon source D-Xylose (C) -0.1 -1.0 -0.1 -0.5 -0.3
carbon source NLDM_metabolites (C) +0.0 -0.5 -0.4 -0.9 -0.0
carbon source Sucrose (C) -0.2 -1.5 +0.0 -0.1 +0.0
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.2 -1.3 +0.2 -0.2 -0.4
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.0 -1.5 +0.3 +0.0 -0.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.0 -1.2 -0.0 +0.2 -0.4
carbon source NLDM_metabolites (C) -0.1 -1.4 +0.0 -0.2 +0.4
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.0 -1.5 +0.2 +0.3 -0.0
carbon source D-Glucose (C) -0.1 -0.8 +0.0 -0.6 +0.2
carbon source D-Mannitol (C) -0.1 -1.0 +0.1 -0.3 +0.3
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.0 -1.1 +0.2 -0.1 -0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 -0.9 +0.1 +0.4 -0.6
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.0 -1.3 +0.4 +0.2 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.1 -1.4 +0.4 -0.1 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.1 -0.9 -0.1 +0.4 -0.0
nitrogen source L-Serine (N); ShewMM media; no shaking +0.0 -1.1 -0.0 +0.2 +0.3
nitrogen source L-Serine (N); RCH2 media; shaking +0.1 -1.1 +0.1 +0.2 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking -0.1 -1.0 +0.2 +0.1 +0.3
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.0 -1.3 +0.1 +0.6 +0.1
nf_with_fulln NF_with_fullN +0.0 -1.0 +0.2 +0.3 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.1 -0.9 +0.2 +0.1 +0.3
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.0 -1.0 +0.1 +0.2 +0.3
nitrogen source L-Serine (N); RCH2 media; shaking +0.1 -0.8 +0.2 +0.1 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.1 -0.8 -0.0 +0.5 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.1 -0.7 -0.0 +0.5 +0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.0 -0.7 +0.2 +0.5 +0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.0 +0.5 +0.3 -0.3 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.1 +0.5 +0.2 -0.4 +0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.2 +0.4 +0.2 -0.5 +0.4
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