Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS18710 and EX31_RS18715 are separated by 43 nucleotidesEX31_RS18715 and EX31_RS18720 are separated by 11 nucleotidesEX31_RS18720 and EX31_RS18725 are separated by 63 nucleotidesEX31_RS18725 and EX31_RS18730 are separated by 8 nucleotides EX31_RS18710: EX31_RS18710 - LysR family transcriptional regulator, at 322,903 to 323,832 _RS18710 EX31_RS18715: EX31_RS18715 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 323,876 to 325,000 _RS18715 EX31_RS18720: EX31_RS18720 - S-formylglutathione hydrolase, at 325,012 to 325,869 _RS18720 EX31_RS18725: EX31_RS18725 - glutathione ABC transporter permease GsiD, at 325,933 to 326,853 _RS18725 EX31_RS18730: EX31_RS18730 - glutathione ABC transporter permease GsiC, at 326,862 to 327,782 _RS18730
Group Condition EX31_RS18710 EX31_RS18715 EX31_RS18720 EX31_RS18725 EX31_RS18730
carbon source D-Mannitol (C) -0.4 +0.0 -0.1 -0.5 -0.4
nln NLN +0.0 -0.2 -0.4 -0.6 -0.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.3 +0.0 -0.3 -0.1 -0.4
carbon source NLDM_metabolites (C) -0.1 -0.1 -0.4 -0.3 -0.1
carbon source D-Mannitol (C) -0.0 -0.2 -0.5 -0.0 -0.3
nl-ccm NL-CCM -0.2 -0.2 -0.2 -0.2 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.1 -0.1 -0.3 -0.6 -0.2
carbon source NLDM_metabolites (C) +0.3 +0.1 +0.2 -0.9 -0.7
mgl MGL -0.1 -0.2 -0.4 -0.4 +0.2
nf_with_fulln NF_with_fullN +0.2 -0.1 -0.3 -0.5 -0.2
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.3 -0.2 -0.1 -0.7 -0.1
nf_with_fulln NF_with_fullN +0.2 -0.2 -0.2 -0.4 -0.1
nf_with_fulln NF_with_fullN +0.2 -0.1 -0.3 -0.5 -0.1
nf_with_fulln NF_with_fullN +0.5 -0.2 -0.5 -0.3 -0.2
nf_with_fulln NF_with_fullN +0.4 -0.2 -0.3 -0.4 -0.1
nf_with_fulln NF_with_fullN +0.2 -0.1 -0.0 -0.5 -0.1
carbon source D-Xylose (C) +0.2 +0.1 +0.1 -0.6 -0.3
carbon source Sucrose (C) -0.1 +0.0 -0.3 +0.2 -0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.3 -0.1 -0.0 -0.3 -0.3
nitrogen source L-Serine (N); ShewMM media; no shaking -0.1 +0.1 -0.6 +0.1 +0.2
nf_with10percent_fulln NF_with10percent_fullN +0.6 -0.2 -0.3 -0.3 +0.0
nf_with10percent_fulln NF_with10percent_fullN +0.7 +0.0 -0.3 -0.6 +0.0
nf_with10percent_fulln NF_with10percent_fullN +0.5 -0.1 -0.3 -0.1 -0.0
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.3 +0.2 -0.2 -0.2 -0.2
nf_with10percent_fulln NF_with10percent_fullN +0.5 -0.1 -0.3 -0.1 -0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.5 +0.1 -0.2 -0.2 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen +0.6 +0.1 +0.1 -0.2 -0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.7 +0.1 -0.1 -0.2 -0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.7 +0.2 -0.2 -0.2 +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.8 +0.0 -0.3 -0.0 +0.1
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