Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS18670 and EX31_RS18675 are separated by 136 nucleotidesEX31_RS18675 and EX31_RS18680 are separated by 18 nucleotidesEX31_RS18680 and EX31_RS18685 are separated by 226 nucleotidesEX31_RS18685 and EX31_RS18690 are separated by 250 nucleotides EX31_RS18670: EX31_RS18670 - outer membrane permeability protein SanA, at 313,056 to 313,979 _RS18670 EX31_RS18675: EX31_RS18675 - galactose/methyl galactoside ABC transporter permease MglC, at 314,116 to 315,126 _RS18675 EX31_RS18680: EX31_RS18680 - galactose/methyl galactoside ABC transporter ATP-binding protein MglA, at 315,145 to 316,677 _RS18680 EX31_RS18685: EX31_RS18685 - galactose/glucose ABC transporter substrate-binding protein MglB, at 316,904 to 317,902 _RS18685 EX31_RS18690: EX31_RS18690 - HTH-type transcriptional regulator GalS, at 318,153 to 319,184 _RS18690
Group Condition EX31_RS18670 EX31_RS18675 EX31_RS18680 EX31_RS18685 EX31_RS18690
carbon source D-Xylose (C) -0.1 -0.3 -0.4 -0.3 -0.6
carbon source D-Xylose (C) -0.0 -0.3 -0.2 -0.0 -0.6
carbon source D,L-Lactate (C) -1.0 +0.2 -0.1 +0.1 -0.3
nitrogen source L-Serine (N); ShewMM media; no shaking -0.5 -0.1 -0.3 +0.3 -0.3
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.5 -0.0 -0.2 +0.1 -0.2
nf_with10percent_fulln NF_with10percent_fullN +0.2 -0.1 -0.2 -0.3 -0.3
mgl MGL +0.1 +0.1 -0.2 -0.2 -0.5
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.2 +0.0 -0.4 -0.1 -0.2
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.4 +0.3 -0.0 +0.2 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.6 +0.1 -0.0 +0.1 +0.2
carbon source NLDM_metabolites (C) +0.0 -0.2 -0.4 +0.3 +0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.6 +0.2 +0.1 +0.1 +0.3
nitrogen source L-Serine (N); ShewMM media; no shaking -0.3 -0.1 +0.0 +0.3 +0.3
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.5 +0.3 +0.1 +0.3 +0.2
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.7 +0.1 +0.1 -0.1 -0.3
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.2 +0.1 -0.1 +0.4 +0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.8 +0.1 -0.1 -0.1 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.7 -0.0 -0.1 -0.1 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.6 -0.1 +0.2 -0.1 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.5 +0.0 +0.1 -0.1 +0.3
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.9 +0.1 +0.1 +0.0 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.7 +0.1 +0.1 +0.1 +0.0
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.6 +0.1 +0.1 +0.0 +0.1
nl-ccm NL-CCM +0.4 +0.1 +0.1 +0.2 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.7 +0.1 -0.0 +0.0 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.8 +0.2 -0.1 +0.1 +0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.6 +0.2 +0.3 +0.0 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.8 +0.2 +0.1 +0.1 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.8 +0.2 +0.0 +0.1 +0.3
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.8 +0.1 +0.1 +0.2 +0.2
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EX31_RS18670
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EX31_RS18675
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EX31_RS18685
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EX31_RS18690
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