Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS18270 and EX31_RS25550 are separated by 416 nucleotidesEX31_RS25550 and EX31_RS18275 are separated by 82 nucleotidesEX31_RS18275 and EX31_RS18280 overlap by 4 nucleotidesEX31_RS18280 and EX31_RS18285 are separated by 12 nucleotides EX31_RS18270: EX31_RS18270 - formate C-acetyltransferase, at 226,434 to 228,716 _RS18270 EX31_RS25550: EX31_RS25550 - DNA-binding transcriptional regulator, at 229,133 to 229,351 _RS25550 EX31_RS18275: EX31_RS18275 - phage late control D family protein, at 229,434 to 230,597 _RS18275 EX31_RS18280: EX31_RS18280 - phage tail protein, at 230,594 to 231,058 _RS18280 EX31_RS18285: EX31_RS18285 - phage tail tape measure protein, at 231,071 to 233,524 _RS18285
Group Condition EX31_RS18270 EX31_RS25550 EX31_RS18275 EX31_RS18280 EX31_RS18285
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.8 -0.1 +0.1 -0.3 -0.0
nitrogen source L-Serine (N); ShewMM media; no shaking -0.7 -0.0 -0.2 -0.3 +0.0
nitrogen source L-Serine (N); RCH2 media; no shaking -1.0 -0.2 -0.0 +0.1 +0.0
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -1.0 +0.2 +0.1 -0.3 +0.0
nitrogen source L-Serine (N); RCH2 media; no shaking -1.0 +0.4 -0.3 -0.2 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking -0.8 +0.1 +0.0 -0.2 -0.0
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -1.1 +0.1 -0.0 +0.1 -0.1
nl-ccm; low oxygen NL-CCM; low oxygen -0.8 -0.2 -0.0 +0.1 +0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.7 +0.2 +0.1 -0.4 -0.0
nitrogen source L-Serine (N); ShewMM media; no shaking -0.9 -0.0 -0.1 +0.2 +0.1
nl-ccm; low oxygen NL-CCM; low oxygen -0.9 +0.1 -0.1 +0.2 -0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking -1.0 +0.2 +0.1 +0.1 +0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -1.0 -0.0 -0.0 +0.3 +0.0
nl-ccm; low oxygen NL-CCM; low oxygen -0.8 +0.1 -0.2 +0.1 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.3 +0.3 -0.3 -0.2 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking -0.9 +0.3 -0.0 +0.0 +0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.8 +0.1 -0.0 +0.2 +0.0
nl-ccm; high oxygen NL-CCM; high oxygen -0.4 -0.2 +0.1 +0.2 -0.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.7 +0.1 +0.1 -0.1 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.8 +0.4 +0.2 -0.2 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.6 +0.2 +0.3 -0.2 +0.0
carbon source NLDM_metabolites (C) +0.2 +0.1 -0.3 +0.3 -0.3
mgl MGL -0.2 +0.4 +0.1 +0.3 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.2 +0.5 +0.1 -0.2 -0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.6 -0.3 +0.2 +0.0 +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.9 -0.1 +0.1 -0.4 -0.0
nf_with_fulln NF_with_fullN +0.0 +0.6 +0.2 -0.2 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.6 -0.1 -0.1 +0.1 +0.2
nf_with_fulln NF_with_fullN +0.2 +0.5 +0.1 -0.1 +0.2
nf_with_fulln NF_with_fullN +0.2 +0.6 +0.1 -0.1 +0.3
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EX31_RS18270
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EX31_RS25550
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EX31_RS18285
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