Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS17780 and EX31_RS17785 are separated by 86 nucleotidesEX31_RS17785 and EX31_RS17790 are separated by 15 nucleotidesEX31_RS17790 and EX31_RS17795 overlap by 4 nucleotidesEX31_RS17795 and EX31_RS17800 are separated by 30 nucleotides EX31_RS17780: EX31_RS17780 - fumarylacetoacetate hydrolase family protein, at 112,647 to 113,534 _RS17780 EX31_RS17785: EX31_RS17785 - [citrate (pro-3S)-lyase] ligase, at 113,621 to 114,715 _RS17785 EX31_RS17790: EX31_RS17790 - citrate lyase acyl carrier protein, at 114,731 to 115,021 _RS17790 EX31_RS17795: EX31_RS17795 - citrate (pro-3S)-lyase subunit beta, at 115,018 to 115,893 _RS17795 EX31_RS17800: EX31_RS17800 - citrate lyase subunit alpha, at 115,924 to 117,450 _RS17800
Group Condition EX31_RS17780 EX31_RS17785 EX31_RS17790 EX31_RS17795 EX31_RS17800
nitrogen source L-Serine (N); ShewMM media; no shaking +0.3 -0.5 -1.6 -0.1 +0.2
carbon source Sucrose (C) -0.3 +0.5 -0.3 -0.1 -0.4
carbon source D-Xylose (C) -0.3 +0.4 -0.7 +0.0 -0.1
mgl MGL -0.2 +0.3 -0.1 -0.5 -0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.0 +0.1 -0.8 +0.2 -0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.0 -0.5 -0.4 +0.3 +0.1
nl-ccm; low oxygen NL-CCM; low oxygen -0.1 +0.4 -0.4 -0.2 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.3 -0.8 +0.0 +0.1 +0.0
mgl MGL -0.2 -0.4 -0.2 +0.3 +0.1
nitrogen source L-Serine (N); RCH2 media; shaking +0.1 -0.3 +0.2 -0.2 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.2 -0.2 +0.2 -0.4 -0.0
carbon source D-Mannitol (C) -0.3 +0.5 -0.4 +0.1 -0.0
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.1 -0.7 +0.6 -0.0 +0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.3 -0.1 -0.4 -0.0 +0.3
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.2 -0.5 +0.2 +0.3 -0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.2 -0.5 +0.2 +0.4 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.0 -0.5 +0.1 +0.6 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.0 +0.4 -0.4 +0.3 +0.0
carbon source Sucrose (C) -0.4 +0.5 +0.4 -0.0 -0.1
nitrogen source L-Serine (N); ShewMM media; shaking +0.1 -0.4 +0.4 +0.3 +0.0
nl-ccm_agar NL-CCM_agar +0.1 +0.6 -0.2 +0.2 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.0 -0.3 +0.5 +0.4 -0.2
carbon source casaminos (C) -0.1 +0.4 -0.4 +0.5 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.1 -0.2 +0.2 +0.5 +0.2
nitrogen source L-Serine (N); RCH2 media; no shaking +0.2 +0.3 -0.0 +0.5 -0.1
carbon source D,L-Lactate (C) -0.2 +0.9 +0.0 +0.1 -0.1
nl-ccm; low oxygen NL-CCM; low oxygen -0.1 +0.6 +0.2 +0.3 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.1 -0.2 +0.8 +0.1 +0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.1 +0.4 -0.0 +0.4 +0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.0 +0.4 +0.4 +0.2 +0.2
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