Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS17545 and EX31_RS17550 overlap by 4 nucleotidesEX31_RS17550 and EX31_RS17555 overlap by 4 nucleotidesEX31_RS17555 and EX31_RS17560 are separated by 16 nucleotidesEX31_RS17560 and EX31_RS17565 are separated by 573 nucleotides EX31_RS17545: EX31_RS17545 - ABC transporter permease, at 61,616 to 62,563 _RS17545 EX31_RS17550: EX31_RS17550 - dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein, at 62,560 to 64,356 _RS17550 EX31_RS17555: EX31_RS17555 - ABC transporter ATP-binding protein, at 64,353 to 65,138 _RS17555 EX31_RS17560: EX31_RS17560 - FadR family transcriptional regulator, at 65,155 to 65,928 _RS17560 EX31_RS17565: EX31_RS17565 - GGDEF domain-containing protein, at 66,502 to 67,416 _RS17565
Group Condition EX31_RS17545 EX31_RS17550 EX31_RS17555 EX31_RS17560 EX31_RS17565
carbon source NLDM_metabolites (C) +0.1 -0.4 -0.7 -0.1 -1.0
nl-ccm; high oxygen NL-CCM; high oxygen -0.2 +0.0 -0.3 -0.2 -0.5
mgl MGL -0.1 -0.2 -0.1 -0.3 -0.4
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 +0.0 -0.1 -0.2 -0.6
nitrogen source L-Serine (N); RCH2 media; no shaking +0.2 -0.1 -0.2 -0.2 -0.4
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 +0.2 -0.1 -0.2 -0.7
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.0 +0.1 -0.1 -0.2 -0.5
nl-ccm; low oxygen NL-CCM; low oxygen +0.1 +0.0 -0.2 -0.1 -0.5
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.0 -0.0 +0.2 -0.4 -0.5
carbon source NLDM_metabolites (C) +0.1 -0.2 -0.2 +0.1 -0.5
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.0 +0.1 +0.1 -0.3 -0.5
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.2 +0.2 -0.1 -0.2 -0.7
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.1 -0.1 +0.1 -0.6 -0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.2 -0.0 -0.0 -0.6 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.2 +0.2 -0.1 -0.3 -0.5
nitrogen source L-Serine (N); ShewMM media; shaking +0.0 +0.1 +0.3 +0.0 -0.8
nl-ccm_agar NL-CCM_agar +0.2 -0.1 -0.3 -0.2 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.1 -0.1 +0.1 -0.3 +0.2
carbon source D,L-Lactate (C) +0.1 +0.2 -0.4 +0.2 -0.3
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.3 -0.1 +0.0 -0.1 -0.3
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.2 +0.1 +0.1 -0.2 -0.4
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.2 -0.1 +0.0 +0.1 -0.4
carbon source D,L-Lactate (C) +0.2 +0.1 +0.1 -0.5 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.1 +0.1 -0.1 +0.2 -0.3
nitrogen source L-Serine (N); ShewMM media; no shaking +0.1 +0.2 -0.0 +0.3 -0.6
nl-ccm NL-CCM +0.1 +0.1 +0.1 -0.4 +0.2
carbon source D-Xylose (C) +0.0 +0.2 -0.3 +0.3 -0.2
carbon source D-Glucose (C) +0.1 +0.1 +0.3 -0.1 -0.2
carbon source Sucrose (C) -0.2 +0.2 +0.1 +0.5 +0.0
nitrogen source L-Serine (N); RCH2 media; shaking +0.2 +0.1 +0.1 +0.4 +0.1
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