Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS26075 and EX31_RS17385 are separated by 94 nucleotidesEX31_RS17385 and EX31_RS17390 are separated by 246 nucleotidesEX31_RS17390 and EX31_RS17395 are separated by 20 nucleotidesEX31_RS17395 and EX31_RS17400 are separated by 10 nucleotides EX31_RS26075: EX31_RS26075 - hypothetical protein, at 25,821 to 25,964 _RS26075 EX31_RS17385: EX31_RS17385 - tRNA-Ser, at 26,059 to 26,148 _RS17385 EX31_RS17390: EX31_RS17390 - succinylglutamate desuccinylase, at 26,395 to 27,375 _RS17390 EX31_RS17395: EX31_RS17395 - N-succinylarginine dihydrolase, at 27,396 to 28,739 _RS17395 EX31_RS17400: EX31_RS17400 - succinylglutamate-semialdehyde dehydrogenase, at 28,750 to 30,228 _RS17400
Group Condition EX31_RS26075 EX31_RS17385 EX31_RS17390 EX31_RS17395 EX31_RS17400
carbon source D-Glucose (C) -1.3 -0.6 -0.1 -0.1 -0.1
carbon source D,L-Lactate (C) -0.6 -0.2 -0.9 -0.3 -0.0
nitrogen source L-Glutamine (N); RCH2 media; shaking -1.5 -0.5 +0.3 -0.3 -0.1
carbon source D-Mannitol (C) -0.9 -0.3 -0.1 -0.2 -0.3
nitrogen source L-Serine (N); ShewMM media; shaking -1.1 -0.0 -0.1 -0.4 -0.2
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -1.2 -0.1 -0.3 +0.0 +0.1
carbon source casaminos (C) -1.4 -0.1 +0.2 +0.1 -0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.2 -0.3 -1.2 +0.2 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking -1.6 -0.3 +0.4 +0.1 +0.0
carbon source D-Xylose (C) -1.6 -0.1 +0.5 -0.1 -0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -1.4 -0.5 +0.1 +0.4 +0.0
mgl MGL -1.4 +0.2 -0.3 +0.3 -0.1
carbon source NLDM_metabolites (C) -0.3 -0.2 -1.0 +0.3 -0.2
nl-ccm NL-CCM -1.4 +0.2 -0.0 +0.1 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.9 +0.0 -0.4 +0.3 +0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking -1.2 -0.1 +0.2 +0.1 +0.0
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.7 -0.4 +0.2 -0.1 +0.2
nl-ccm_agar NL-CCM_agar -0.8 +0.3 -0.4 +0.1 -0.1
carbon source D-Xylose (C) -0.5 -0.4 +0.5 +0.2 +0.0
nl-ccm; high oxygen NL-CCM; high oxygen +0.8 +0.5 +0.0 -0.2 +0.2
nl-ccm; low oxygen NL-CCM; low oxygen +0.8 +0.4 +0.3 +0.1 +0.1
nl-ccm; high oxygen NL-CCM; high oxygen +0.7 +0.6 +0.2 +0.1 +0.0
nl-ccm; high oxygen NL-CCM; high oxygen +0.9 +0.6 -0.0 +0.0 +0.2
nl-ccm; high oxygen NL-CCM; high oxygen +0.8 +0.7 +0.0 +0.1 +0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +1.6 +1.6 -0.4 -0.2 +0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +1.6 +1.8 -0.4 +0.1 -0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +1.3 +1.7 -0.1 +0.0 +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +1.6 +1.6 -0.2 -0.0 +0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +1.3 +1.6 +0.0 +0.1 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +1.6 +1.8 -0.0 -0.0 +0.1
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EX31_RS26075
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EX31_RS17385
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