Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS17085 and EX31_RS17090 are separated by 112 nucleotidesEX31_RS17090 and EX31_RS17095 are separated by 197 nucleotidesEX31_RS17095 and EX31_RS17100 are separated by 417 nucleotidesEX31_RS17100 and EX31_RS24985 are separated by 97 nucleotides EX31_RS17085: EX31_RS17085 - integrase, at 9,127 to 9,397 _RS17085 EX31_RS17090: EX31_RS17090 - IS110 family transposase, at 9,510 to 10,756 _RS17090 EX31_RS17095: EX31_RS17095 - hypothetical protein, at 10,954 to 12,228 _RS17095 EX31_RS17100: EX31_RS17100 - colicin immunity protein Cui, at 12,646 to 13,191 _RS17100 EX31_RS24985: EX31_RS24985 - hypothetical protein, at 13,289 to 14,623 _RS24985
Group Condition EX31_RS17085 EX31_RS17090 EX31_RS17095 EX31_RS17100 EX31_RS24985
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.6 +0.1 +0.2 -1.9 -0.3
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.8 +0.1 -0.2 -1.1 +0.0
carbon source D,L-Lactate (C) -1.2 +0.0 +0.1 -0.9 +0.2
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 +0.0 +0.0 -1.3 -0.4
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.6 +0.1 -0.1 -0.6 -0.3
nitrogen source L-Serine (N); RCH2 media; no shaking -0.4 +0.1 +0.2 -0.8 -0.5
nitrogen source L-Serine (N); ShewMM media; shaking -0.2 +0.1 +0.1 -1.3 -0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.5 +0.0 -0.3 -0.1 -0.4
carbon source NLDM_metabolites (C) -0.5 +0.1 -0.0 -0.8 -0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.3 +0.0 -0.1 -0.9 +0.0
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.6 +0.2 +0.1 -0.9 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking -0.3 -0.0 -0.2 -0.7 +0.0
mgl MGL +0.1 +0.0 +0.0 -1.1 -0.0
nitrogen source L-Serine (N); RCH2 media; shaking -0.9 +0.1 +0.1 -0.4 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.5 +0.0 -0.1 -0.5 +0.1
nitrogen source L-Serine (N); ShewMM media; shaking -0.4 -0.0 +0.1 -0.6 -0.1
carbon source casaminos (C) +0.0 -0.2 +0.3 -1.1 +0.0
nf_with_fulln NF_with_fullN -0.0 -0.0 +0.1 -0.9 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.2 +0.1 -0.0 -0.8 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking -0.0 +0.2 +0.0 -1.0 -0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 -0.0 +0.0 -0.8 -0.2
nitrogen source L-Serine (N); RCH2 media; no shaking -0.6 +0.2 +0.0 -0.2 -0.2
nitrogen source L-Serine (N); ShewMM media; no shaking -0.7 -0.0 -0.1 +0.5 -0.4
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.2 +0.3 -0.3 -0.4 +0.0
nl-ccm_agar NL-CCM_agar +0.2 +0.1 -0.1 -0.7 +0.1
nl-ccm; low oxygen NL-CCM; low oxygen +0.3 -0.0 +0.1 -0.6 -0.2
nf_with10percent_fulln NF_with10percent_fullN +0.2 -0.0 +0.2 -0.6 -0.1
carbon source NLDM_metabolites (C) +0.6 -0.0 +0.1 -0.7 +0.1
carbon source D-Mannitol (C) -0.5 -0.0 +0.3 +0.4 +0.1
carbon source Sucrose (C) +0.3 +0.0 -0.4 +0.5 +0.2
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