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Protein
Homologs
Fitness for 5 genes in
Rahnella sp. WP5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
EX31_RS17085 and EX31_RS17090 are separated by 112 nucleotides
EX31_RS17090 and EX31_RS17095 are separated by 197 nucleotides
EX31_RS17095 and EX31_RS17100 are separated by 417 nucleotides
EX31_RS17100 and EX31_RS24985 are separated by 97 nucleotides
EX31_RS17085: EX31_RS17085 - integrase, at 9,127 to 9,397
_RS17085
EX31_RS17090: EX31_RS17090 - IS110 family transposase, at 9,510 to 10,756
_RS17090
EX31_RS17095: EX31_RS17095 - hypothetical protein, at 10,954 to 12,228
_RS17095
EX31_RS17100: EX31_RS17100 - colicin immunity protein Cui, at 12,646 to 13,191
_RS17100
EX31_RS24985: EX31_RS24985 - hypothetical protein, at 13,289 to 14,623
_RS24985
Group
Condition
EX31
_RS17085
EX31
_RS17090
EX31
_RS17095
EX31
_RS17100
EX31
_RS24985
nitrogen source
L-Glutamine (N); RCH2 media; shaking
-0.6
+0.1
+0.2
-1.9
-0.3
nitrogen source
L-Glutamine (N); ShewMM media; no shaking
-0.8
+0.1
-0.2
-1.1
+0.0
carbon source
D,L-Lactate (C)
-1.2
+0.0
+0.1
-0.9
+0.2
nl-ccm; high oxygen
NL-CCM; high oxygen
+0.1
+0.0
+0.0
-1.3
-0.4
nitrogen source
Ammonium chloride (N); RCH2 media; shaking
-0.6
+0.1
-0.1
-0.6
-0.3
nitrogen source
L-Serine (N); RCH2 media; no shaking
-0.4
+0.1
+0.2
-0.8
-0.5
nitrogen source
L-Serine (N); ShewMM media; shaking
-0.2
+0.1
+0.1
-1.3
-0.1
nitrogen source
L-Glutamine (N); ShewMM media; no shaking
-0.5
+0.0
-0.3
-0.1
-0.4
carbon source
NLDM_metabolites (C)
-0.5
+0.1
-0.0
-0.8
-0.0
nitrogen source
Ammonium chloride (N); RCH2 media; no shaking
-0.3
+0.0
-0.1
-0.9
+0.0
nitrogen source
Ammonium chloride (N); ShewMM media; no shaking
-0.6
+0.2
+0.1
-0.9
-0.1
nitrogen source
L-Serine (N); RCH2 media; no shaking
-0.3
-0.0
-0.2
-0.7
+0.0
mgl
MGL
+0.1
+0.0
+0.0
-1.1
-0.0
nitrogen source
L-Serine (N); RCH2 media; shaking
-0.9
+0.1
+0.1
-0.4
+0.1
nitrogen source
Ammonium chloride (N); ShewMM media; no shaking
-0.5
+0.0
-0.1
-0.5
+0.1
nitrogen source
L-Serine (N); ShewMM media; shaking
-0.4
-0.0
+0.1
-0.6
-0.1
carbon source
casaminos (C)
+0.0
-0.2
+0.3
-1.1
+0.0
nf_with_fulln
NF_with_fullN
-0.0
-0.0
+0.1
-0.9
-0.1
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
-0.2
+0.1
-0.0
-0.8
+0.1
nitrogen source
L-Serine (N); ShewMM media; no shaking
-0.0
+0.2
+0.0
-1.0
-0.1
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
+0.1
-0.0
+0.0
-0.8
-0.2
nitrogen source
L-Serine (N); RCH2 media; no shaking
-0.6
+0.2
+0.0
-0.2
-0.2
nitrogen source
L-Serine (N); ShewMM media; no shaking
-0.7
-0.0
-0.1
+0.5
-0.4
nitrogen source
L-Glutamine (N); RCH2 media; no shaking
-0.2
+0.3
-0.3
-0.4
+0.0
nl-ccm_agar
NL-CCM_agar
+0.2
+0.1
-0.1
-0.7
+0.1
nl-ccm; low oxygen
NL-CCM; low oxygen
+0.3
-0.0
+0.1
-0.6
-0.2
nf_with10percent_fulln
NF_with10percent_fullN
+0.2
-0.0
+0.2
-0.6
-0.1
carbon source
NLDM_metabolites (C)
+0.6
-0.0
+0.1
-0.7
+0.1
carbon source
D-Mannitol (C)
-0.5
-0.0
+0.3
+0.4
+0.1
carbon source
Sucrose (C)
+0.3
+0.0
-0.4
+0.5
+0.2
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