Fitness for 4 genes in Rahnella sp. WP5

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500 ntEX31_RS16955 and EX31_RS16960 are separated by 17 nucleotidesEX31_RS16960 and EX31_RS16965 are separated by 49 nucleotidesEX31_RS16965 and EX31_RS16970 overlap by 4 nucleotides EX31_RS16955: EX31_RS16955 - ABC transporter ATP-binding protein, at 186 to 935 _RS16955 EX31_RS16960: EX31_RS16960 - ABC transporter substrate-binding protein, at 953 to 1,954 _RS16960 EX31_RS16965: EX31_RS16965 - iron ABC transporter permease, at 2,004 to 3,662 _RS16965 EX31_RS16970: EX31_RS16970 - MFS transporter, at 3,659 to 5,152 _RS16970
Group Condition EX31_RS16955 EX31_RS16960 EX31_RS16965 EX31_RS16970
nitrogen source L-Glutamine (N); ShewMM media; shaking -1.0 +0.0 -0.6 -0.1
carbon source Sucrose (C) -1.7 +0.1 -0.1 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.7 +0.2 -0.7 -0.1
nitrogen source L-Serine (N); ShewMM media; shaking -0.0 -0.6 -0.3 -0.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.0 +0.0 -0.7 -0.4
carbon source D-Xylose (C) -0.6 -0.2 -0.3 +0.2
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.6 +0.3 -0.2 -0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.7 -0.3 +0.4 +0.1
nl-ccm_agar NL-CCM_agar -0.6 +0.4 -0.3 -0.0
mgl MGL -0.5 +0.5 -0.3 -0.1
nf_with_fulln NF_with_fullN -0.3 -0.4 -0.1 +0.4
carbon source Sucrose (C) -0.4 -0.5 +0.4 +0.1
carbon source D,L-Lactate (C) +0.6 -0.0 -0.8 -0.1
nl-ccm_agar NL-CCM_agar -0.5 +0.5 -0.3 +0.0
nf_with10percent_fulln NF_with10percent_fullN +0.4 -0.3 -0.3 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.5 +0.4 -0.0 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.4 +0.3 -0.4 -0.3
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.5 -0.3 +0.3 -0.2
nf_with_fulln NF_with_fullN +0.4 -0.3 -0.2 +0.4
carbon source casaminos (C) -0.4 +0.5 +0.0 +0.3
nl-ccm; high oxygen NL-CCM; high oxygen +0.3 +0.1 -0.4 +0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.4 +0.5 +0.2 +0.2
nitrogen source L-Serine (N); ShewMM media; no shaking +0.3 +0.3 +0.2 -0.4
mgl MGL +0.3 +0.5 +0.4 -0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.4 +0.1 +0.5 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.1 +0.5 +0.3 +0.2
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.1 +0.5 +0.8 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.6 +0.4 -0.0 +0.2
nl-ccm; low oxygen NL-CCM; low oxygen +0.4 +0.6 +0.1 -0.0
carbon source NLDM_metabolites (C) +0.7 +0.8 -0.1 -0.1
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EX31_RS16955
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EX31_RS16965
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EX31_RS16970
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