Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS16895 and EX31_RS16900 are separated by 8 nucleotidesEX31_RS16900 and EX31_RS16905 are separated by 188 nucleotidesEX31_RS16905 and EX31_RS16910 are separated by 90 nucleotidesEX31_RS16910 and EX31_RS26050 are separated by 1388 nucleotides EX31_RS16895: EX31_RS16895 - LacI family transcriptional regulator, at 7,314 to 8,294 _RS16895 EX31_RS16900: EX31_RS16900 - sugar phosphate isomerase/epimerase, at 8,303 to 9,142 _RS16900 EX31_RS16905: EX31_RS16905 - MFS transporter, at 9,331 to 10,527 _RS16905 EX31_RS16910: EX31_RS16910 - MFS transporter, at 10,618 to 11,817 _RS16910 EX31_RS26050: EX31_RS26050 - transposase, at 13,206 to 13,623 _RS26050
Group Condition EX31_RS16895 EX31_RS16900 EX31_RS16905 EX31_RS16910 EX31_RS26050
carbon source casaminos (C) -0.5 -0.4 +0.0 +0.1 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.2 -0.6 +0.0 +0.2 +0.1
carbon source D-Xylose (C) -0.5 -0.2 +0.0 +0.0 +0.0
mgl MGL -0.3 -0.4 -0.0 +0.0 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.1 -0.4 +0.2 +0.0 -0.2
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.0 -0.3 +0.0 +0.0 -0.3
mgl MGL -0.3 -0.1 -0.1 +0.0 +0.1
nl-ccm; low oxygen NL-CCM; low oxygen -0.2 -0.3 -0.0 +0.0 +0.0
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.1 -0.1 -0.2 +0.2 -0.3
carbon source D-Xylose (C) -0.4 -0.1 +0.1 -0.1 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking -0.3 +0.1 +0.0 -0.1 -0.2
nf_with10percent_fulln NF_with10percent_fullN -0.2 +0.1 -0.1 -0.1 +0.0
carbon source D-Glucose (C) -0.1 -0.4 +0.1 +0.1 +0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.2 +0.1 -0.1 +0.0 -0.2
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.1 -0.4 -0.0 +0.1 +0.0
mgl MGL -0.1 +0.2 -0.0 -0.2 -0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 -0.4 +0.0 +0.2 +0.1
carbon source Sucrose (C) -0.1 +0.3 -0.0 -0.1 -0.1
carbon source casaminos (C) -0.5 +0.3 +0.1 -0.0 +0.1
nf_with_fulln NF_with_fullN -0.2 +0.2 -0.1 -0.0 +0.1
carbon source D,L-Lactate (C) +0.2 -0.1 -0.1 +0.1 -0.1
nitrogen source L-Serine (N); ShewMM media; no shaking -0.2 +0.3 -0.2 +0.1 +0.2
nitrogen source L-Serine (N); RCH2 media; no shaking -0.1 +0.4 -0.1 +0.0 -0.0
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.1 +0.4 -0.0 -0.0 -0.1
nln NLN +0.0 +0.3 +0.1 -0.0 -0.0
nitrogen source L-Serine (N); RCH2 media; no shaking +0.2 +0.5 -0.1 +0.2 -0.3
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.0 +0.2 +0.2 -0.0 -0.0
carbon source D-Mannitol (C) -0.0 -0.0 +0.1 +0.2 +0.2
carbon source NLDM_metabolites (C) +0.0 +0.7 +0.2 -0.2 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking -0.0 +0.4 +0.1 +0.0 +0.3
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EX31_RS16895
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EX31_RS16900
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EX31_RS16910
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EX31_RS26050
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