Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS16720 and EX31_RS16725 are separated by 161 nucleotidesEX31_RS16725 and EX31_RS16730 are separated by 147 nucleotidesEX31_RS16730 and EX31_RS16735 are separated by 156 nucleotidesEX31_RS16735 and EX31_RS16740 are separated by 461 nucleotides EX31_RS16720: EX31_RS16720 - helix-turn-helix domain-containing protein, at 26,792 to 27,640 _RS16720 EX31_RS16725: EX31_RS16725 - phytanoyl-CoA dioxygenase, at 27,802 to 28,569 _RS16725 EX31_RS16730: EX31_RS16730 - LysR family transcriptional regulator, at 28,717 to 29,613 _RS16730 EX31_RS16735: EX31_RS16735 - pirin family protein, at 29,770 to 30,495 _RS16735 EX31_RS16740: EX31_RS16740 - transcriptional regulator, at 30,957 to 31,304 _RS16740
Group Condition EX31_RS16720 EX31_RS16725 EX31_RS16730 EX31_RS16735 EX31_RS16740
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.8 -1.3 +0.1 -0.5 +0.1
carbon source NLDM_metabolites (C) -2.2 +0.6 -1.1 -0.6 +0.8
nitrogen source L-Serine (N); RCH2 media; no shaking -0.6 +0.2 -0.2 -1.3 -0.3
carbon source D-Mannitol (C) -0.4 -0.0 -0.3 -0.8 -0.4
carbon source Sucrose (C) -0.9 +0.0 -0.6 -0.5 +0.1
carbon source Sucrose (C) -0.6 +0.1 -0.6 -0.3 +0.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.7 -0.9 +0.1 -0.3 +0.6
nl-ccm; vial NL-CCM; vial +0.0 -1.1 +0.3 -0.4 +0.1
carbon source D,L-Lactate (C) -1.2 +0.3 -0.2 -0.3 +0.3
nf_with_fulln NF_with_fullN -0.4 -1.0 +0.2 +0.2 +0.1
mgl MGL -0.2 -1.5 -0.0 +0.5 +0.2
carbon source D-Mannitol (C) -0.7 +0.0 -0.3 -0.5 +0.7
nl-ccm NL-CCM +0.4 -1.1 -0.0 +0.2 -0.2
carbon source D,L-Lactate (C) -1.0 +1.2 -0.8 -0.6 +0.5
nitrogen source L-Serine (N); ShewMM media; no shaking -0.2 -0.8 -0.3 +0.2 +0.6
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.2 -0.4 +0.4 -0.9 +0.2
carbon source D-Xylose (C) -0.7 +0.2 -0.4 -0.1 +0.6
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.2 -1.8 +0.1 +0.6 +0.6
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.1 -1.2 +0.4 +0.3 +0.1
carbon source NLDM_metabolites (C) -1.0 +0.7 -0.1 -0.5 +0.6
carbon source casaminos (C) -0.9 +1.0 -0.3 +0.1 +0.0
nln NLN -0.2 -0.8 +0.3 +0.5 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.4 +0.0 +0.3 -0.4 +0.6
carbon source D-Xylose (C) -0.2 +0.9 -0.5 -0.3 +0.2
mgl MGL +0.3 -0.6 +0.6 -0.3 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 +0.0 +0.8 +0.6 -0.3
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.2 -0.1 +0.9 +0.3 -0.3
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.4 -0.6 +0.2 +0.6 +0.4
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.3 +0.5 +0.4 +0.3 +0.5
nl-ccm_agar NL-CCM_agar +0.4 +0.7 +0.5 +0.7 +0.0
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