Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS16555 and EX31_RS16560 are separated by 458 nucleotidesEX31_RS16560 and EX31_RS16565 are separated by 471 nucleotidesEX31_RS16565 and EX31_RS16570 are separated by 163 nucleotidesEX31_RS16570 and EX31_RS16575 are separated by 98 nucleotides EX31_RS16555: EX31_RS16555 - PTS sugar transporter subunit IIB, at 25,948 to 26,277 _RS16555 EX31_RS16560: EX31_RS16560 - DeoR/GlpR transcriptional regulator, at 26,736 to 27,509 _RS16560 EX31_RS16565: EX31_RS16565 - alpha/beta hydrolase, at 27,981 to 28,979 _RS16565 EX31_RS16570: EX31_RS16570 - NADPH-dependent F420 reductase, at 29,143 to 29,765 _RS16570 EX31_RS16575: EX31_RS16575 - LysR family transcriptional regulator, at 29,864 to 30,760 _RS16575
Group Condition EX31_RS16555 EX31_RS16560 EX31_RS16565 EX31_RS16570 EX31_RS16575
carbon source NLDM_metabolites (C) -3.8 -0.5 +0.0 +0.4 -0.1
carbon source casaminos (C) -0.7 -0.3 -0.1 -0.3 -0.0
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -1.1 -0.2 +0.1 +0.1 -0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking -1.4 +0.0 +0.0 -0.0 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -1.0 -0.1 +0.0 -0.0 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.1 -0.6 +0.1 -0.7 -0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.9 -0.2 +0.1 -0.2 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking -0.9 -0.1 +0.1 -0.1 +0.0
nitrogen source Ammonium chloride (N); ShewMM media; shaking -1.0 -0.1 -0.0 +0.2 -0.1
nitrogen source L-Serine (N); ShewMM media; shaking -1.1 +0.2 -0.0 +0.1 -0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.5 -0.1 +0.0 -0.3 -0.1
carbon source casaminos (C) +0.3 -0.5 -0.1 -0.5 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.6 -0.1 +0.1 -0.2 -0.0
carbon source D,L-Lactate (C) -0.9 -0.0 +0.0 +0.1 -0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.6 -0.0 -0.0 +0.0 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.2 -0.6 +0.0 -0.3 -0.0
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.4 +0.2 +0.0 -0.4 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.7 +0.1 -0.0 -0.2 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking -0.9 +0.2 -0.1 +0.0 +0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.3 +0.3 +0.1 -0.4 -0.1
nitrogen source L-Serine (N); ShewMM media; shaking -0.3 -0.1 +0.1 -0.2 +0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.4 +0.4 -0.1 -0.0 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.5 -0.2 +0.0 +0.4 -0.0
carbon source D-Glucose (C) +0.6 +0.1 -0.1 -0.6 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.6 -0.6 -0.1 -0.1 +0.0
nitrogen source L-Serine (N); RCH2 media; shaking -0.4 +0.2 +0.0 +0.2 -0.0
carbon source D-Xylose (C) +0.5 -0.3 -0.0 +0.0 -0.2
carbon source D-Xylose (C) +0.7 -0.2 -0.0 -0.3 -0.0
nl-ccm; vial NL-CCM; vial +0.4 +0.3 -0.0 -0.3 -0.1
nln NLN +0.5 +0.2 -0.0 +0.2 -0.0
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