Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS16335 and EX31_RS16340 are separated by 102 nucleotidesEX31_RS16340 and EX31_RS16345 overlap by 4 nucleotidesEX31_RS16345 and EX31_RS16350 are separated by 78 nucleotidesEX31_RS16350 and EX31_RS16355 are separated by 60 nucleotides EX31_RS16335: EX31_RS16335 - hypothetical protein, at 13,370 to 13,717 _RS16335 EX31_RS16340: EX31_RS16340 - type IV conjugative transfer system coupling protein TraD, at 13,820 to 16,507 _RS16340 EX31_RS16345: EX31_RS16345 - conjugative relaxase, at 16,504 to 19,332 _RS16345 EX31_RS16350: EX31_RS16350 - DsbA family protein, at 19,411 to 20,205 _RS16350 EX31_RS16355: EX31_RS16355 - hypothetical protein, at 20,266 to 20,535 _RS16355
Group Condition EX31_RS16335 EX31_RS16340 EX31_RS16345 EX31_RS16350 EX31_RS16355
nl-ccm NL-CCM -0.1 -0.1 -0.3 -0.6 -0.5
nl-ccm NL-CCM -0.0 -0.1 -0.3 -0.6 -0.6
nl-ccm NL-CCM -0.1 -0.1 -0.2 -0.6 -0.4
nf_with_fulln NF_with_fullN -0.2 -0.0 -0.1 -0.2 -1.0
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.3 -0.1 -0.2 -0.4 -0.5
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.3 -0.1 -0.2 -0.4 -0.5
nl-ccm NL-CCM -0.1 -0.0 -0.2 -0.6 -0.5
nf_with_fulln NF_with_fullN +0.0 -0.0 -0.1 -0.4 -1.0
mgl MGL -0.3 -0.0 -0.2 -0.5 -0.4
nl-ccm NL-CCM -0.1 -0.1 -0.2 -0.6 -0.4
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.1 -0.1 -0.2 -0.4 -0.5
nf_with_fulln NF_with_fullN +0.1 -0.0 -0.1 -0.3 -1.0
mgl MGL +0.1 -0.0 -0.2 -0.7 -0.5
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.3 -0.2 -0.3 -0.5 -0.6
nf_with_fulln NF_with_fullN +0.1 -0.0 -0.1 -0.3 -0.9
nl-ccm NL-CCM +0.2 -0.1 -0.2 -0.5 -0.6
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.1 -0.1 -0.2 -0.3 -0.5
carbon source casaminos (C) -0.0 -0.2 +0.0 +0.1 -0.9
nl-ccm; vial NL-CCM; vial +0.3 +0.0 +0.2 -0.3 -0.4
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.6 -0.0 -0.1 +0.0 -0.5
nl-ccm; high oxygen NL-CCM; high oxygen -0.2 -0.1 +0.1 +0.6 +0.2
nitrogen source L-Serine (N); RCH2 media; shaking -0.1 +0.1 -0.1 +0.1 +0.7
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.1 -0.0 +0.1 +0.4 +0.8
carbon source D-Xylose (C) +0.0 -0.1 +0.0 +1.0 +0.7
carbon source D-Xylose (C) +0.1 -0.2 +0.0 +1.9 +1.2
carbon source D-Glucose (C) +0.0 -0.1 +0.1 +2.1 +1.3
carbon source D-Mannitol (C) -0.1 -0.0 +0.0 +2.2 +1.7
carbon source Sucrose (C) +0.1 -0.0 +0.1 +2.5 +1.6
carbon source Sucrose (C) -0.2 +0.0 +0.1 +2.9 +1.5
carbon source D-Mannitol (C) -0.2 +0.1 +0.1 +3.3 +2.2
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EX31_RS16335
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EX31_RS16340
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EX31_RS16350
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EX31_RS16355
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