Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS15965 and EX31_RS15970 overlap by 29 nucleotidesEX31_RS15970 and EX31_RS15975 are separated by 128 nucleotidesEX31_RS15975 and EX31_RS15980 are separated by 25 nucleotidesEX31_RS15980 and EX31_RS15985 are separated by 75 nucleotides EX31_RS15965: EX31_RS15965 - DUF494 domain-containing protein, at 3,081 to 3,554 _RS15965 EX31_RS15970: EX31_RS15970 - DNA-protecting protein DprA, at 3,526 to 4,695 _RS15970 EX31_RS15975: EX31_RS15975 - peptide deformylase, at 4,824 to 5,336 _RS15975 EX31_RS15980: EX31_RS15980 - methionyl-tRNA formyltransferase, at 5,362 to 6,297 _RS15980 EX31_RS15985: EX31_RS15985 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 6,373 to 7,662 _RS15985
Group Condition EX31_RS15965 EX31_RS15970 EX31_RS15975 EX31_RS15980 EX31_RS15985
nitrogen source L-Serine (N); RCH2 media; shaking -0.0 -0.1 -1.6 N.D. -0.0
nitrogen source L-Serine (N); RCH2 media; no shaking -0.0 +0.0 -0.9 N.D. -0.3
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.0 -0.0 -1.0 N.D. -0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.0 -0.1 -0.8 N.D. -0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.0 -0.1 -0.8 N.D. -0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.1 +0.0 -0.8 N.D. -0.2
nitrogen source L-Serine (N); RCH2 media; no shaking -0.0 -0.0 -0.8 N.D. -0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.0 -0.1 -0.8 N.D. -0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.1 -0.0 -0.5 N.D. -0.2
carbon source Sucrose (C) -0.1 -0.1 -0.2 N.D. -0.4
nitrogen source L-Serine (N); ShewMM media; shaking -0.0 -0.1 -0.8 N.D. +0.1
carbon source D,L-Lactate (C) +0.2 -0.0 -0.6 N.D. -0.3
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.0 +0.1 -0.8 N.D. -0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.0 -0.0 -0.5 N.D. -0.2
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.0 -0.2 -0.6 N.D. +0.0
nitrogen source L-Serine (N); ShewMM media; no shaking -0.1 +0.0 -0.8 N.D. +0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.1 +0.1 -0.4 N.D. -0.2
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 +0.1 -0.5 N.D. -0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.2 +0.2 -0.1 N.D. -0.4
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.2 +0.2 +0.0 N.D. -0.4
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.2 +0.1 +0.2 N.D. -0.3
carbon source D-Mannitol (C) -0.0 +0.0 +0.5 N.D. -0.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 +0.2 +0.3 N.D. -0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.0 -0.0 +0.7 N.D. -0.2
carbon source NLDM_metabolites (C) -0.1 -0.1 +0.8 N.D. -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.0 +0.1 +0.6 N.D. -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.2 +0.0 +0.6 N.D. -0.0
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 +0.1 +0.7 N.D. -0.4
nl-ccm NL-CCM -0.1 -0.0 +0.9 N.D. -0.1
nl-ccm NL-CCM -0.0 +0.0 +0.9 N.D. -0.1
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