Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS15910 and EX31_RS15915 are separated by 45 nucleotidesEX31_RS15915 and EX31_RS15920 are separated by 92 nucleotidesEX31_RS15920 and EX31_RS15925 are separated by 153 nucleotidesEX31_RS15925 and EX31_RS15930 overlap by 4 nucleotides EX31_RS15910: EX31_RS15910 - thiol:disulfide interchange protein DsbA, at 41,047 to 41,670 _RS15910 EX31_RS15915: EX31_RS15915 - serine/threonine protein kinase, at 41,716 to 42,702 _RS15915 EX31_RS15920: EX31_RS15920 - YihD family protein, at 42,795 to 43,064 _RS15920 EX31_RS15925: EX31_RS15925 - molybdenum cofactor guanylyltransferase MobA, at 43,218 to 43,805 _RS15925 EX31_RS15930: EX31_RS15930 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 43,802 to 44,335 _RS15930
Group Condition EX31_RS15910 EX31_RS15915 EX31_RS15920 EX31_RS15925 EX31_RS15930
nitrogen source L-Glutamine (N); ShewMM media; no shaking -2.4 -0.1 -0.5 -0.0 +0.2
nitrogen source L-Glutamine (N); ShewMM media; no shaking -1.9 -0.0 +0.0 -0.1 +0.2
nitrogen source L-Glutamine (N); ShewMM media; no shaking -1.9 -0.0 -0.0 +0.1 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -1.0 -0.1 -0.7 +0.1 +0.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking -1.3 +0.1 -0.5 +0.0 +0.2
nf_with_fulln NF_with_fullN -1.9 +0.0 +0.1 +0.4 -0.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking -1.7 +0.1 -0.1 +0.1 +0.2
nf_with_fulln NF_with_fullN -1.8 +0.0 +0.4 +0.1 -0.1
nf_with_fulln NF_with_fullN -1.5 +0.0 +0.1 +0.2 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -1.3 +0.1 -0.1 -0.0 +0.2
carbon source casaminos (C) -0.1 -0.1 -0.9 -0.2 +0.1
carbon source NLDM_metabolites (C) -0.0 +0.1 -1.1 -0.1 +0.1
nf_with_fulln NF_with_fullN -1.6 +0.1 +0.3 +0.3 -0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking -1.1 +0.1 -0.0 +0.0 +0.1
nf_with_fulln NF_with_fullN -1.7 +0.0 +0.9 +0.2 -0.1
nf_with_fulln NF_with_fullN -1.4 +0.0 +0.5 +0.4 -0.1
nf_with10percent_fulln NF_with10percent_fullN -0.9 +0.1 +0.3 +0.0 -0.0
nf_with10percent_fulln NF_with10percent_fullN -0.9 -0.0 +0.5 -0.0 +0.0
nf_with10percent_fulln NF_with10percent_fullN -0.9 +0.1 +0.4 +0.2 -0.1
carbon source Sucrose (C) +0.5 +0.1 -0.6 -0.3 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.5 +0.1 -0.9 -0.0 +0.3
nln NLN -0.4 +0.1 +0.6 +0.2 +0.0
carbon source D-Mannitol (C) +0.9 +0.0 -0.7 +0.3 +0.1
nl-ccm; vial NL-CCM; vial -0.2 +0.1 +0.3 +0.7 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.8 +0.0 +0.2 +0.1 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.6 -0.1 +0.6 +0.1 +0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.2 -0.0 +1.0 +0.1 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.6 -0.1 +0.4 +0.5 +0.0
carbon source D-Xylose (C) +0.8 -0.0 +0.2 +0.2 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.7 -0.0 +0.9 -0.0 -0.1
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EX31_RS15915
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EX31_RS15930
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