Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS15900 and EX31_RS15905 are separated by 350 nucleotidesEX31_RS15905 and EX31_RS15910 are separated by 387 nucleotidesEX31_RS15910 and EX31_RS15915 are separated by 45 nucleotidesEX31_RS15915 and EX31_RS15920 are separated by 92 nucleotides EX31_RS15900: EX31_RS15900 - YihA family ribosome biogenesis GTP-binding protein, at 36,854 to 37,504 _RS15900 EX31_RS15905: EX31_RS15905 - DNA polymerase I, at 37,855 to 40,659 _RS15905 EX31_RS15910: EX31_RS15910 - thiol:disulfide interchange protein DsbA, at 41,047 to 41,670 _RS15910 EX31_RS15915: EX31_RS15915 - serine/threonine protein kinase, at 41,716 to 42,702 _RS15915 EX31_RS15920: EX31_RS15920 - YihD family protein, at 42,795 to 43,064 _RS15920
Group Condition EX31_RS15900 EX31_RS15905 EX31_RS15910 EX31_RS15915 EX31_RS15920
nitrogen source L-Glutamine (N); ShewMM media; no shaking N.D. -0.1 -2.4 -0.1 -0.5
nitrogen source L-Glutamine (N); RCH2 media; no shaking N.D. -0.5 -1.3 +0.1 -0.5
nf_with_fulln NF_with_fullN N.D. -0.4 -1.9 +0.0 +0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking N.D. -0.1 -1.9 -0.0 +0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking N.D. -0.1 -1.9 -0.0 -0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking N.D. -0.2 -1.7 +0.1 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking N.D. -0.1 -1.0 -0.1 -0.7
nf_with_fulln NF_with_fullN N.D. -0.3 -1.5 +0.0 +0.1
nf_with_fulln NF_with_fullN N.D. -0.3 -1.8 +0.0 +0.4
nf_with_fulln NF_with_fullN N.D. -0.3 -1.6 +0.1 +0.3
nitrogen source L-Glutamine (N); RCH2 media; no shaking N.D. -0.5 -1.1 +0.1 -0.0
nf_with_fulln NF_with_fullN N.D. -0.4 -1.7 +0.0 +0.9
nf_with_fulln NF_with_fullN N.D. -0.3 -1.4 +0.0 +0.5
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum N.D. -1.5 +0.3 +0.0 +0.2
nf_with10percent_fulln NF_with10percent_fullN N.D. -0.4 -1.0 -0.0 +0.3
nf_with10percent_fulln NF_with10percent_fullN N.D. -0.4 -0.9 +0.1 +0.3
nf_with10percent_fulln NF_with10percent_fullN N.D. -0.4 -0.9 -0.0 +0.5
nf_with10percent_fulln NF_with10percent_fullN N.D. -0.4 -0.9 +0.1 +0.4
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum N.D. -1.2 +0.2 +0.0 +0.2
mgl MGL N.D. -0.4 -0.6 -0.0 +0.5
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum N.D. -1.2 +0.1 +0.1 +0.5
nitrogen source Ammonium chloride (N); ShewMM media; shaking N.D. -0.2 +0.5 +0.1 -0.9
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum N.D. -1.3 +0.4 -0.0 +0.5
nl-ccm NL-CCM N.D. -0.9 -0.1 -0.1 +0.7
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum N.D. -1.4 +0.2 -0.0 +1.0
nl-ccm_agar NL-CCM_agar N.D. -0.7 -0.2 -0.0 +0.7
nl-ccm NL-CCM N.D. -0.9 +0.2 -0.0 +0.5
carbon source D-Mannitol (C) N.D. -0.2 +0.9 +0.0 -0.7
nl-ccm; ambient oxygen NL-CCM; ambient oxygen N.D. -0.5 +0.6 -0.1 +0.4
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum N.D. -0.2 +0.7 -0.0 +0.9
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