Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS15795 and EX31_RS15800 are separated by 278 nucleotidesEX31_RS15800 and EX31_RS15805 are separated by 54 nucleotidesEX31_RS15805 and EX31_RS15810 are separated by 19 nucleotidesEX31_RS15810 and EX31_RS15815 are separated by 5 nucleotides EX31_RS15795: EX31_RS15795 - NAD-dependent DNA ligase LigB, at 10,408 to 12,105 _RS15795 EX31_RS15800: EX31_RS15800 - guanylate kinase, at 12,384 to 13,007 _RS15800 EX31_RS15805: EX31_RS15805 - DNA-directed RNA polymerase subunit omega, at 13,062 to 13,337 _RS15805 EX31_RS15810: EX31_RS15810 - bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase, at 13,357 to 15,465 _RS15810 EX31_RS15815: EX31_RS15815 - tRNA (guanosine(18)-2'-O)-methyltransferase TrmH, at 15,471 to 16,169 _RS15815
Group Condition EX31_RS15795 EX31_RS15800 EX31_RS15805 EX31_RS15810 EX31_RS15815
mgl MGL +0.2 N.D. -0.6 -1.3 -0.3
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.1 N.D. -0.9 -0.7 -0.3
carbon source casaminos (C) -0.1 N.D. -0.6 -1.1 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.1 N.D. -0.6 -1.1 -0.0
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.0 N.D. -1.0 -0.4 -0.1
mgl MGL +0.0 N.D. -0.8 -0.6 +0.1
mgl MGL +0.1 N.D. -0.8 -0.5 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.1 N.D. -1.0 -0.2 +0.0
carbon source NLDM_metabolites (C) +0.2 N.D. -1.1 -0.5 +0.3
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.1 N.D. -0.9 -0.3 -0.0
mgl MGL +0.1 N.D. -0.4 -0.8 +0.0
nitrogen source L-Serine (N); ShewMM media; shaking +0.1 N.D. -0.4 -0.7 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.1 N.D. -0.7 -0.2 +0.2
nln NLN +0.1 N.D. +0.2 -0.9 +0.1
carbon source D-Xylose (C) +0.0 N.D. -0.0 -0.6 +0.4
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.2 N.D. +0.4 -0.6 -0.0
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 N.D. +0.4 -0.4 +0.2
nf_with10percent_fulln NF_with10percent_fullN +0.2 N.D. +0.5 -0.2 +0.1
nf_with10percent_fulln NF_with10percent_fullN +0.3 N.D. +0.6 -0.3 +0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.0 N.D. +0.7 -0.1 +0.3
nl-ccm; high oxygen NL-CCM; high oxygen +0.2 N.D. +0.7 -0.1 -0.0
carbon source D,L-Lactate (C) +0.1 N.D. +0.9 -0.0 +0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.1 N.D. +1.0 +0.3 +0.2
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 N.D. +0.9 +0.4 +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.2 N.D. +1.1 +0.3 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.2 N.D. +1.2 +0.6 -0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 N.D. +1.5 +0.6 -0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.3 N.D. +1.6 +0.6 -0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.2 N.D. +1.5 +0.8 -0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.2 N.D. +1.7 +0.8 +0.2
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