Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS25425 and EX31_RS15775 are separated by 115 nucleotidesEX31_RS15775 and EX31_RS15780 are separated by 143 nucleotidesEX31_RS15780 and EX31_RS15785 are separated by 145 nucleotidesEX31_RS15785 and EX31_RS15790 are separated by 343 nucleotides EX31_RS25425: EX31_RS25425 - AlpA family transcriptional regulator, at 5,814 to 6,047 _RS25425 EX31_RS15775: EX31_RS15775 - hypothetical protein, at 6,163 to 7,242 _RS15775 EX31_RS15780: EX31_RS15780 - beta-ketoacyl-ACP synthase II, at 7,386 to 8,660 _RS15780 EX31_RS15785: EX31_RS15785 - TetR/AcrR family transcriptional regulator, at 8,806 to 9,426 _RS15785 EX31_RS15790: EX31_RS15790 - trimeric intracellular cation channel family protein, at 9,770 to 10,387 _RS15790
Group Condition EX31_RS25425 EX31_RS15775 EX31_RS15780 EX31_RS15785 EX31_RS15790
carbon source casaminos (C) -0.1 +0.1 +0.1 -0.3 -0.1
nl-ccm; vial NL-CCM; vial -0.2 +0.1 +0.2 +0.1 -0.1
nln NLN -0.2 +0.0 +0.2 +0.2 +0.0
nf_with_fulln NF_with_fullN -0.1 +0.0 +0.1 +0.3 -0.1
nf_with_fulln NF_with_fullN -0.2 +0.0 +0.2 +0.4 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen -0.2 +0.0 +0.2 +0.2 +0.2
nf_with10percent_fulln NF_with10percent_fullN -0.2 +0.0 +0.1 +0.4 +0.0
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.2 +0.0 +0.2 +0.1 +0.3
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.1 +0.1 +0.2 +0.1 +0.1
carbon source NLDM_metabolites (C) +0.1 +0.2 -0.2 +0.1 +0.2
nf_with_fulln NF_with_fullN +0.0 -0.0 +0.2 +0.3 -0.1
carbon source NLDM_metabolites (C) -0.1 +0.2 +0.1 -0.0 +0.4
nln NLN -0.1 +0.0 +0.1 +0.3 +0.1
nf_with10percent_fulln NF_with10percent_fullN -0.1 +0.1 +0.1 +0.4 -0.0
nf_with_fulln NF_with_fullN -0.2 +0.0 +0.2 +0.3 +0.1
nf_with_fulln NF_with_fullN -0.2 +0.1 +0.2 +0.4 -0.0
nf_with10percent_fulln NF_with10percent_fullN -0.1 +0.1 +0.2 +0.4 -0.0
nl-ccm; high oxygen NL-CCM; high oxygen -0.1 -0.1 +0.2 +0.3 +0.2
nl-ccm; high oxygen NL-CCM; high oxygen -0.0 -0.0 +0.1 +0.4 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 -0.0 +0.1 +0.6 +0.1
nl-ccm; high oxygen NL-CCM; high oxygen -0.0 -0.0 +0.1 +0.4 +0.2
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 +0.1 +0.1 +0.3 +0.1
nitrogen source L-Serine (N); RCH2 media; shaking +0.2 +0.2 +0.0 +0.1 +0.1
nf_with10percent_fulln NF_with10percent_fullN -0.1 +0.0 +0.2 +0.4 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.2 +0.0 +0.2 +0.6 +0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 -0.0 +0.2 +0.5 +0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 +0.0 +0.1 +0.5 +0.0
nf_with_fulln NF_with_fullN +0.1 +0.1 +0.3 +0.5 -0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.0 -0.0 +0.1 +0.7 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.2 -0.0 +0.2 +0.7 +0.1
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EX31_RS25425
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EX31_RS15775
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EX31_RS15785
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EX31_RS15790
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