Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS15740 and EX31_RS15745 are separated by 27 nucleotidesEX31_RS15745 and EX31_RS15750 overlap by 14 nucleotidesEX31_RS15750 and EX31_RS15755 are separated by 199 nucleotidesEX31_RS15755 and EX31_RS15760 are separated by 22 nucleotides EX31_RS15740: EX31_RS15740 - IS3 family transposase, at 74 to 1,248 _RS15740 EX31_RS15745: EX31_RS15745 - hypothetical protein, at 1,276 to 1,935 _RS15745 EX31_RS15750: EX31_RS15750 - site-specific DNA-methyltransferase, at 1,922 to 2,647 _RS15750 EX31_RS15755: EX31_RS15755 - hypothetical protein, at 2,847 to 3,674 _RS15755 EX31_RS15760: EX31_RS15760 - hypothetical protein, at 3,697 to 4,281 _RS15760
Group Condition EX31_RS15740 EX31_RS15745 EX31_RS15750 EX31_RS15755 EX31_RS15760
nl-ccm; ambient oxygen NL-CCM; ambient oxygen N.D. -0.1 -0.2 -0.6 -0.3
nf_with10percent_fulln NF_with10percent_fullN N.D. -0.1 -0.3 -0.4 -0.3
nl-ccm; high oxygen NL-CCM; high oxygen N.D. +0.0 -0.3 -0.6 -0.2
nf_with10percent_fulln NF_with10percent_fullN N.D. -0.0 -0.2 -0.5 -0.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen N.D. -0.1 -0.2 -0.4 -0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen N.D. -0.1 -0.2 -0.3 -0.2
nf_with10percent_fulln NF_with10percent_fullN N.D. +0.1 -0.2 -0.3 -0.2
carbon source casaminos (C) N.D. +0.1 -0.1 -0.1 -0.6
nl-ccm; ambient oxygen NL-CCM; ambient oxygen N.D. -0.0 -0.3 -0.5 +0.1
nl-ccm; low oxygen NL-CCM; low oxygen N.D. +0.0 -0.3 -0.5 +0.1
nf_with10percent_fulln NF_with10percent_fullN N.D. +0.1 -0.2 -0.2 -0.2
nf_with_fulln NF_with_fullN N.D. +0.1 -0.2 -0.4 +0.1
nf_with_fulln NF_with_fullN N.D. +0.1 -0.2 -0.2 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum N.D. -0.0 +0.1 +0.2 -0.4
carbon source Sucrose (C) N.D. +0.1 -0.1 +0.2 -0.4
nitrogen source L-Serine (N); RCH2 media; no shaking N.D. +0.1 +0.2 +0.1 -0.5
nitrogen source L-Glutamine (N); ShewMM media; shaking N.D. +0.2 +0.2 +0.1 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking N.D. +0.2 +0.2 -0.2 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking N.D. +0.2 +0.2 +0.4 -0.2
nitrogen source L-Glutamine (N); ShewMM media; shaking N.D. +0.3 +0.2 -0.1 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking N.D. +0.0 +0.2 +0.3 +0.3
nitrogen source L-Glutamine (N); RCH2 media; no shaking N.D. +0.2 +0.2 -0.1 +0.4
nitrogen source L-Serine (N); RCH2 media; no shaking N.D. +0.2 +0.2 +0.3 +0.0
nitrogen source L-Serine (N); RCH2 media; no shaking N.D. +0.2 +0.2 +0.2 +0.2
nitrogen source L-Glutamine (N); ShewMM media; no shaking N.D. +0.2 +0.2 +0.2 +0.2
nitrogen source L-Glutamine (N); ShewMM media; shaking N.D. +0.2 +0.2 +0.3 +0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking N.D. +0.2 +0.4 +0.4 -0.1
nitrogen source L-Serine (N); RCH2 media; shaking N.D. +0.2 +0.3 +0.5 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking N.D. +0.3 +0.2 +0.5 -0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking N.D. +0.2 +0.2 +0.5 +0.1
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