Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS15640 and EX31_RS15645 are separated by 215 nucleotidesEX31_RS15645 and EX31_RS15650 overlap by 14 nucleotidesEX31_RS15650 and EX31_RS15655 are separated by 366 nucleotidesEX31_RS15655 and EX31_RS15660 are separated by 116 nucleotides EX31_RS15640: EX31_RS15640 - porphobilinogen synthase, at 26,214 to 27,188 _RS15640 EX31_RS15645: EX31_RS15645 - peptidase domain-containing ABC transporter, at 27,404 to 29,503 _RS15645 EX31_RS15650: EX31_RS15650 - HlyD family secretion protein, at 29,490 to 30,836 _RS15650 EX31_RS15655: EX31_RS15655 - hypothetical protein, at 31,203 to 31,394 _RS15655 EX31_RS15660: EX31_RS15660 - TIGR01620 family protein, at 31,511 to 32,578 _RS15660
Group Condition EX31_RS15640 EX31_RS15645 EX31_RS15650 EX31_RS15655 EX31_RS15660
carbon source NLDM_metabolites (C) N.D. -0.4 +0.0 -1.8 +0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking N.D. +0.1 +0.4 -2.2 -0.3
nitrogen source Ammonium chloride (N); ShewMM media; shaking N.D. +0.3 -0.1 -1.9 -0.3
nl-ccm; low oxygen NL-CCM; low oxygen N.D. -0.0 +0.0 -1.5 -0.4
nl-ccm; low oxygen NL-CCM; low oxygen N.D. +0.0 -0.0 -1.4 -0.3
nf_with_fulln NF_with_fullN N.D. +0.0 -0.0 -1.1 -0.4
nf_with10percent_fulln NF_with10percent_fullN N.D. -0.1 -0.4 -0.9 -0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen N.D. -0.1 +0.0 -1.0 -0.2
nf_with10percent_fulln NF_with10percent_fullN N.D. +0.2 -0.3 -0.8 -0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum N.D. +0.0 +0.0 -1.3 +0.0
carbon source NLDM_metabolites (C) N.D. -0.1 -0.1 -0.9 -0.0
carbon source D,L-Lactate (C) N.D. -0.2 -0.1 +0.4 -1.1
nl-ccm_agar NL-CCM_agar N.D. +0.1 -0.1 -0.9 +0.3
nitrogen source L-Serine (N); RCH2 media; shaking N.D. +0.1 +0.4 -0.7 -0.3
nitrogen source L-Serine (N); ShewMM media; shaking N.D. +0.4 +0.2 -0.0 -1.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen N.D. +0.0 -0.3 +0.6 -0.4
nl-ccm NL-CCM N.D. +0.1 -0.3 +0.6 -0.4
nitrogen source L-Glutamine (N); RCH2 media; shaking N.D. -0.2 +0.3 +0.4 -0.3
nitrogen source L-Glutamine (N); RCH2 media; shaking N.D. +0.1 -0.3 +1.5 -1.2
nitrogen source L-Glutamine (N); ShewMM media; no shaking N.D. -0.0 +0.0 +1.4 -1.2
nitrogen source L-Serine (N); RCH2 media; no shaking N.D. -0.1 -0.0 +1.0 -0.6
nitrogen source L-Glutamine (N); ShewMM media; shaking N.D. +0.1 +0.1 +1.1 -0.7
carbon source Sucrose (C) N.D. -0.1 -0.2 +0.9 +0.0
nitrogen source L-Serine (N); RCH2 media; shaking N.D. +0.2 +0.1 +0.6 -0.4
nitrogen source L-Glutamine (N); RCH2 media; no shaking N.D. -0.1 +0.2 +1.1 -0.5
nitrogen source L-Serine (N); ShewMM media; no shaking N.D. -0.1 +0.6 +1.0 -0.5
nitrogen source L-Glutamine (N); ShewMM media; no shaking N.D. -0.1 +0.3 +1.1 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking N.D. +0.2 -0.2 +1.5 -0.2
nitrogen source L-Serine (N); ShewMM media; shaking N.D. +0.2 -0.0 +1.0 +0.2
nitrogen source L-Glutamine (N); ShewMM media; no shaking N.D. +0.0 +0.2 +1.1 +0.2
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