Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS15470 and EX31_RS15475 are separated by 122 nucleotidesEX31_RS15475 and EX31_RS15480 are separated by 124 nucleotidesEX31_RS15480 and EX31_RS15485 are separated by 33 nucleotidesEX31_RS15485 and EX31_RS15490 are separated by 66 nucleotides EX31_RS15470: EX31_RS15470 - LysR family transcriptional regulator, at 48,615 to 49,535 _RS15470 EX31_RS15475: EX31_RS15475 - 4-oxalocrotonate tautomerase family protein, at 49,658 to 49,855 _RS15475 EX31_RS15480: EX31_RS15480 - hypothetical protein, at 49,980 to 50,333 _RS15480 EX31_RS15485: EX31_RS15485 - glutaredoxin 2, at 50,367 to 51,014 _RS15485 EX31_RS15490: EX31_RS15490 - alpha/beta hydrolase, at 51,081 to 51,977 _RS15490
Group Condition EX31_RS15470 EX31_RS15475 EX31_RS15480 EX31_RS15485 EX31_RS15490
carbon source D-Xylose (C) +0.1 -0.1 -0.4 -0.1 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.0 -0.1 -0.3 +0.0 -0.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 +0.1 -0.0 -0.3 -0.2
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.2 -0.2 -0.3 +0.1 -0.2
carbon source D,L-Lactate (C) -0.2 +0.1 -0.2 +0.0 -0.1
carbon source D,L-Lactate (C) +0.2 +0.2 -0.1 -0.1 -0.3
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.1 +0.1 -0.4 +0.0 -0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.1 +0.1 -0.4 +0.2 +0.0
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.2 +0.0 -0.2 +0.4 -0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.1 +0.1 -0.3 +0.1 +0.1
carbon source NLDM_metabolites (C) +0.1 +0.0 -0.3 +0.1 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.3 +0.1 -0.1 +0.3 -0.0
nl-ccm; high oxygen NL-CCM; high oxygen -0.0 +0.2 +0.1 -0.1 -0.2
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.1 +0.1 -0.2 +0.2 -0.1
nl-ccm_agar NL-CCM_agar +0.1 +0.1 +0.2 -0.2 -0.0
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.0 +0.1 -0.2 +0.3 -0.1
nf_with_fulln NF_with_fullN -0.1 +0.2 +0.2 -0.2 +0.1
carbon source NLDM_metabolites (C) +0.6 -0.1 +0.3 -0.4 -0.2
nl-ccm; high oxygen NL-CCM; high oxygen -0.1 +0.1 +0.2 +0.1 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.0 +0.1 -0.0 +0.3 -0.2
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.1 +0.1 -0.1 +0.4 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.1 +0.3 +0.2 -0.1 -0.0
nitrogen source L-Serine (N); ShewMM media; no shaking +0.0 +0.4 -0.2 +0.2 +0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.0 +0.2 +0.2 +0.3 -0.1
nitrogen source L-Serine (N); RCH2 media; shaking +0.1 +0.3 -0.0 +0.0 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.0 -0.0 +0.5 +0.2 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking +0.4 -0.1 +0.2 +0.2 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.1 +0.2 +0.4 +0.3 -0.0
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.0 +0.1 +0.4 +0.2 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.0 +0.3 +0.4 +0.2 +0.3
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