Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS15365 and EX31_RS15370 are separated by 15 nucleotidesEX31_RS15370 and EX31_RS15375 are separated by 1 nucleotidesEX31_RS15375 and EX31_RS15380 overlap by 4 nucleotidesEX31_RS15380 and EX31_RS15385 overlap by 4 nucleotides EX31_RS15365: EX31_RS15365 - cysteine desulfurase NifS, at 23,715 to 24,920 _RS15365 EX31_RS15370: EX31_RS15370 - homocitrate synthase, at 24,936 to 26,138 _RS15370 EX31_RS15375: EX31_RS15375 - nitrogen fixation protein NifW, at 26,140 to 26,478 _RS15375 EX31_RS15380: EX31_RS15380 - nitrogen fixation protein NifZ, at 26,475 to 26,918 _RS15380 EX31_RS15385: EX31_RS15385 - nitrogen fixation protein NifM, at 26,915 to 27,709 _RS15385
Group Condition EX31_RS15365 EX31_RS15370 EX31_RS15375 EX31_RS15380 EX31_RS15385
carbon source D,L-Lactate (C) -0.1 -0.1 -0.8 -0.1 +0.0
carbon source D,L-Lactate (C) +0.1 -0.1 -1.2 -0.1 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.0 -0.1 -0.8 -0.1 -0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.1 -0.2 -0.6 +0.0 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.1 -0.4 -0.4 -0.1 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking -0.6 -0.7 +0.6 -0.1 -0.0
nitrogen source L-Serine (N); ShewMM media; no shaking -0.0 -0.1 -0.3 -0.4 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.1 -0.0 -0.6 -0.2 +0.0
carbon source Sucrose (C) +0.1 -0.2 -0.3 -0.3 +0.2
nl-ccm_agar NL-CCM_agar +0.1 +0.0 -0.3 -0.1 -0.3
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.1 +0.0 -0.5 -0.2 -0.0
nitrogen source L-Serine (N); ShewMM media; no shaking -0.4 -0.2 +0.2 +0.2 -0.4
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.1 -0.2 -0.5 +0.2 +0.0
carbon source D-Glucose (C) -0.1 +0.1 -0.8 -0.0 +0.4
carbon source casaminos (C) -0.0 +0.1 -0.2 -0.3 +0.2
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.2 -0.1 +0.2 -0.3 +0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.2 -0.1 -0.3 -0.1 +0.2
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.1 -0.1 +0.5 -0.3 -0.0
nitrogen source L-Serine (N); RCH2 media; shaking +0.1 -0.1 +0.2 -0.3 +0.3
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.1 -0.0 +0.5 -0.1 +0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.1 -0.1 +0.3 -0.3 +0.3
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.2 +0.0 +0.4 +0.0 +0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.0 -0.1 +0.5 -0.2 +0.3
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.1 -0.1 +0.3 +0.0 +0.2
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.0 -0.1 +0.5 -0.2 +0.3
nitrogen source L-Serine (N); ShewMM media; shaking +0.1 -0.0 +0.4 -0.1 +0.2
carbon source Sucrose (C) +0.0 +0.0 +0.2 -0.1 +0.6
nitrogen source L-Serine (N); RCH2 media; no shaking -0.1 -0.1 +0.8 -0.1 +0.2
carbon source NLDM_metabolites (C) +0.3 +0.3 +0.9 -0.7 +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.2 +0.2 +0.2 +0.1 +0.2
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