Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS15340 and EX31_RS15345 are separated by 49 nucleotidesEX31_RS15345 and EX31_RS15350 overlap by 14 nucleotidesEX31_RS15350 and EX31_RS15355 are separated by 154 nucleotidesEX31_RS15355 and EX31_RS15360 are separated by 17 nucleotides EX31_RS15340: EX31_RS15340 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifE, at 19,071 to 20,444 _RS15340 EX31_RS15345: EX31_RS15345 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifN, at 20,494 to 21,879 _RS15345 EX31_RS15350: EX31_RS15350 - nitrogen fixation protein NifX, at 21,866 to 22,330 _RS15350 EX31_RS15355: EX31_RS15355 - hypothetical protein, at 22,485 to 22,823 _RS15355 EX31_RS15360: EX31_RS15360 - Fe-S cluster assembly protein NifU, at 22,841 to 23,668 _RS15360
Group Condition EX31_RS15340 EX31_RS15345 EX31_RS15350 EX31_RS15355 EX31_RS15360
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.1 +0.1 -0.9 +0.0 -0.3
nitrogen source L-Serine (N); RCH2 media; no shaking +0.1 -0.4 +0.2 -0.4 -0.6
nitrogen source L-Serine (N); ShewMM media; no shaking -0.3 -0.1 +0.3 -0.0 -0.9
nitrogen source L-Serine (N); ShewMM media; no shaking -0.2 -0.2 -0.4 -0.2 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.1 +0.1 -0.6 -0.2 -0.2
carbon source D,L-Lactate (C) +0.2 +0.0 -0.9 -0.3 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.1 -0.0 -0.6 -0.0 -0.2
nitrogen source L-Serine (N); RCH2 media; shaking -0.0 +0.0 -0.9 -0.1 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.1 +0.1 -0.4 -0.2 -0.3
nitrogen source L-Serine (N); RCH2 media; no shaking -0.4 -0.3 +0.5 -0.1 -0.5
carbon source NLDM_metabolites (C) -0.0 -0.3 -0.2 -0.2 +0.1
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.1 +0.1 -0.7 -0.1 +0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.1 -0.2 -0.5 +0.1 +0.0
nitrogen source L-Serine (N); RCH2 media; shaking -0.2 -0.1 -0.3 -0.1 +0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.0 -0.2 -0.3 +0.2 -0.2
carbon source D,L-Lactate (C) +0.0 +0.0 -0.5 -0.3 +0.2
nl-ccm_agar NL-CCM_agar -0.0 -0.1 -0.5 +0.2 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.0 -0.0 -0.8 +0.2 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.1 -0.1 -0.1 +0.2 -0.3
carbon source Sucrose (C) +0.1 -0.1 -0.3 -0.3 +0.2
carbon source D-Xylose (C) -0.1 +0.1 -0.6 -0.1 +0.4
carbon source D-Xylose (C) -0.0 -0.1 +0.0 -0.4 +0.6
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.1 -0.0 +0.3 +0.2 -0.3
carbon source casaminos (C) +0.0 -0.1 -0.3 -0.3 +0.9
carbon source D-Glucose (C) +0.0 -0.2 -0.1 -0.1 +0.6
carbon source D-Mannitol (C) -0.1 +0.1 -0.4 +0.1 +0.7
nf_with10percent_fulln NF_with10percent_fullN +0.1 +0.1 -0.2 +0.2 +0.3
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.0 +0.1 +0.3 -0.2 +0.2
nitrogen source L-Serine (N); ShewMM media; shaking -0.0 +0.1 +0.5 +0.2 -0.1
carbon source NLDM_metabolites (C) +0.2 +0.2 -0.3 -0.5 +1.1
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