Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS15325 and EX31_RS15330 are separated by 75 nucleotidesEX31_RS15330 and EX31_RS15335 are separated by 14 nucleotidesEX31_RS15335 and EX31_RS15340 are separated by 171 nucleotidesEX31_RS15340 and EX31_RS15345 are separated by 49 nucleotides EX31_RS15325: EX31_RS15325 - nitrogenase molybdenum-iron protein subunit beta, at 16,351 to 17,919 _RS15325 EX31_RS15330: EX31_RS15330 - putative nitrogen fixation protein NifT, at 17,995 to 18,210 _RS15330 EX31_RS15335: EX31_RS15335 - protein NifY, at 18,225 to 18,899 _RS15335 EX31_RS15340: EX31_RS15340 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifE, at 19,071 to 20,444 _RS15340 EX31_RS15345: EX31_RS15345 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifN, at 20,494 to 21,879 _RS15345
Group Condition EX31_RS15325 EX31_RS15330 EX31_RS15335 EX31_RS15340 EX31_RS15345
nitrogen source L-Serine (N); RCH2 media; no shaking -0.2 -0.3 -0.1 -0.4 -0.3
nitrogen source L-Serine (N); RCH2 media; no shaking -0.0 -0.3 -0.5 +0.1 -0.4
nitrogen source L-Serine (N); ShewMM media; no shaking -0.2 +0.0 -0.5 -0.2 -0.2
carbon source D,L-Lactate (C) -0.2 -0.3 -0.7 +0.2 +0.0
nitrogen source L-Serine (N); RCH2 media; no shaking -0.1 +0.0 -0.4 -0.2 -0.2
nitrogen source L-Serine (N); RCH2 media; shaking -0.2 -0.3 -0.4 -0.0 +0.0
carbon source D-Glucose (C) -0.1 -0.2 -0.4 +0.0 -0.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.1 -0.3 -0.2 -0.2 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.1 -0.2 -0.0 -0.1 -0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.0 -0.1 -0.2 -0.1 -0.2
nitrogen source L-Serine (N); ShewMM media; no shaking -0.2 +0.1 -0.1 -0.3 -0.1
nitrogen source L-Serine (N); ShewMM media; shaking +0.0 +0.0 -0.5 -0.1 -0.2
carbon source NLDM_metabolites (C) -0.0 -0.1 -0.1 -0.0 -0.3
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.0 -0.3 -0.4 +0.0 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.1 -0.0 -0.3 +0.1 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.0 -0.0 -0.4 -0.1 +0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 +0.0 -0.5 +0.1 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.0 +0.2 -0.4 -0.0 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.1 +0.1 -0.4 -0.0 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.0 +0.2 -0.1 -0.2 -0.1
carbon source casaminos (C) +0.0 -0.2 +0.1 +0.1 -0.2
nl-ccm; vial NL-CCM; vial -0.1 +0.1 +0.2 -0.2 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.1 +0.3 -0.1 -0.2 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen -0.2 +0.0 +0.2 -0.1 +0.0
carbon source Sucrose (C) -0.1 -0.2 +0.3 +0.1 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.1 -0.0 +0.2 +0.0 +0.2
nl-ccm NL-CCM +0.0 +0.1 +0.3 -0.0 -0.1
nf_with_fulln NF_with_fullN +0.0 +0.0 +0.3 -0.1 +0.1
nf_with_fulln NF_with_fullN +0.1 +0.2 +0.3 -0.1 +0.1
carbon source NLDM_metabolites (C) -0.0 -0.0 +0.4 +0.2 +0.2
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EX31_RS15325
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EX31_RS15330
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EX31_RS15345
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